Large Language Models to Identify Social Determinants of Health in Electronic Health Records

1 code implementation • 11 Aug 2023 • Marco Guevara, Shan Chen, Spencer Thomas, Tafadzwa L. Chaunzwa, Idalid Franco, Benjamin Kann, Shalini Moningi, Jack Qian, Madeleine Goldstein, Susan Harper, Hugo JWL Aerts, Guergana K. Savova, Raymond H. Mak, Danielle S. Bitterman

The study also experimented with synthetic data generation and assessed for algorithmic bias.

Adversarial Robustness Ethics +1

FUTURE-AI: International consensus guideline for trustworthy and deployable artificial intelligence in healthcare

no code implementations • 11 Aug 2023 • Karim Lekadir, Aasa Feragen, Abdul Joseph Fofanah, Alejandro F Frangi, Alena Buyx, Anais Emelie, Andrea Lara, Antonio R Porras, An-Wen Chan, Arcadi Navarro, Ben Glocker, Benard O Botwe, Bishesh Khanal, Brigit Beger, Carol C Wu, Celia Cintas, Curtis P Langlotz, Daniel Rueckert, Deogratias Mzurikwao, Dimitrios I Fotiadis, Doszhan Zhussupov, Enzo Ferrante, Erik Meijering, Eva Weicken, Fabio A González, Folkert W Asselbergs, Fred Prior, Gabriel P Krestin, Gary Collins, Geletaw S Tegenaw, Georgios Kaissis, Gianluca Misuraca, Gianna Tsakou, Girish Dwivedi, Haridimos Kondylakis, Harsha Jayakody, Henry C Woodruf, Hugo JWL Aerts, Ian Walsh, Ioanna Chouvarda, Irène Buvat, Islem Rekik, James Duncan, Jayashree Kalpathy-Cramer, Jihad Zahir, Jinah Park, John Mongan, Judy W Gichoya, Julia A Schnabel, Kaisar Kushibar, Katrine Riklund, Kensaku MORI, Kostas Marias, Lameck M Amugongo, Lauren A Fromont, Lena Maier-Hein, Leonor Cerdá Alberich, Leticia Rittner, Lighton Phiri, Linda Marrakchi-Kacem, Lluís Donoso-Bach, Luis Martí-Bonmatí, M Jorge Cardoso, Maciej Bobowicz, Mahsa Shabani, Manolis Tsiknakis, Maria A Zuluaga, Maria Bielikova, Marie-Christine Fritzsche, Marius George Linguraru, Markus Wenzel, Marleen de Bruijne, Martin G Tolsgaard, Marzyeh Ghassemi, Md Ashrafuzzaman, Melanie Goisauf, Mohammad Yaqub, Mohammed Ammar, Mónica Cano Abadía, Mukhtar M E Mahmoud, Mustafa Elattar, Nicola Rieke, Nikolaos Papanikolaou, Noussair Lazrak, Oliver Díaz, Olivier Salvado, Oriol Pujol, Ousmane Sall, Pamela Guevara, Peter Gordebeke, Philippe Lambin, Pieta Brown, Purang Abolmaesumi, Qi Dou, Qinghua Lu, Richard Osuala, Rose Nakasi, S Kevin Zhou, Sandy Napel, Sara Colantonio, Shadi Albarqouni, Smriti Joshi, Stacy Carter, Stefan Klein, Steffen E Petersen, Susanna Aussó, Suyash Awate, Tammy Riklin Raviv, Tessa Cook, Tinashe E M Mutsvangwa, Wendy A Rogers, Wiro J Niessen, Xènia Puig-Bosch, Yi Zeng, Yunusa G Mohammed, Yves Saint James Aquino, Zohaib Salahuddin, Martijn P A Starmans

This work describes the FUTURE-AI guideline as the first international consensus framework for guiding the development and deployment of trustworthy AI tools in healthcare.

Fairness

Enrichment of the NLST and NSCLC-Radiomics computed tomography collections with AI-derived annotations

2 code implementations • 31 May 2023 • Deepa Krishnaswamy, Dennis Bontempi, Vamsi Thiriveedhi, Davide Punzo, David Clunie, Christopher P Bridge, Hugo JWL Aerts, Ron Kikinis, Andrey Fedorov

As part of the effort to enrich public data available within NCI Imaging Data Commons (IDC), here we introduce AI-generated annotations for two collections of computed tomography images of the chest, NSCLC-Radiomics, and the National Lung Screening Trial.

Evaluation of ChatGPT Family of Models for Biomedical Reasoning and Classification

1 code implementation • 5 Apr 2023 • Shan Chen, Yingya Li, Sheng Lu, Hoang Van, Hugo JWL Aerts, Guergana K. Savova, Danielle S. Bitterman

The first task is classifying whether statements of clinical and policy recommendations in scientific literature constitute health advice.

domain classification Prompt Engineering +1

Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy

1 code implementation • 24 Mar 2023 • Shan Chen, Marco Guevara, Nicolas Ramirez, Arpi Murray, Jeremy L. Warner, Hugo JWL Aerts, Timothy A. Miller, Guergana K. Savova, Raymond H. Mak, Danielle S. Bitterman

We developed natural language processing (NLP) models to identify the presence and severity of esophagitis from notes of patients treated with thoracic RT.

Task 2

ModelHub.AI: Dissemination Platform for Deep Learning Models

no code implementations • 26 Nov 2019 • Ahmed Hosny, Michael Schwier, Christoph Berger, Evin P Örnek, Mehmet Turan, Phi V Tran, Leon Weninger, Fabian Isensee, Klaus H. Maier-Hein, Richard McKinley, Michael T Lu, Udo Hoffmann, Bjoern Menze, Spyridon Bakas, Andriy Fedorov, Hugo JWL Aerts

Recent advances in artificial intelligence research have led to a profusion of studies that apply deep learning to problems in image analysis and natural language processing among others.

Benchmarking

Repeatability of Multiparametric Prostate MRI Radiomics Features

2 code implementations • 16 Jul 2018 • Michael Schwier, Joost van Griethuysen, Mark G Vangel, Steve Pieper, Sharon Peled, Clare M. Tempany, Hugo JWL Aerts, Ron Kikinis, Fiona M Fennessy, Andrey Fedorov

In this study we assessed the repeatability of the values of radiomics features for small prostate tumors using test-retest Multiparametric Magnetic Resonance Imaging (mpMRI) images.

Image Registration