1 code implementation • 21 Nov 2023 • Jesus de la Fuente, Guillermo Serrano, Uxía Veleiro, Mikel Casals, Laura Vera, Marija Pizurica, Antonio Pineda-Lucena, Idoia Ochoa, Silve Vicent, Olivier Gevaert, Mikel Hernaez
In this work, we first perform an in-depth evaluation of current DTI datasets and prediction models through a robust benchmarking process, and show that DTI prediction methods based on transductive models lack generalization and lead to inflated performance when evaluated as previously done in the literature, hence not being suited for drug repurposing approaches.
1 code implementation • 20 Nov 2023 • Jesus de la Fuente, Naroa Legarra, Guillermo Serrano, Irene Marin-Goni, Aintzane Diaz-Mazkiaran, Markel Benito Sendin, Ana Garcia Osta, Krishna R. Kalari, Carlos Fernandez-Granda, Idoia Ochoa, Mikel Hernaez
Also, we demonstrate that Sweetwater effectively uncovers biologically meaningful patterns during the training process, increasing the reliability of the results.
2 code implementations • 8 Nov 2019 • Mohit Goyal, Kedar Tatwawadi, Shubham Chandak, Idoia Ochoa
We propose DZip, a general-purpose compressor for sequential data that exploits the well-known modeling capabilities of neural networks (NNs) for prediction, followed by arithmetic coding.
1 code implementation • 20 Nov 2018 • Mohit Goyal, Kedar Tatwawadi, Shubham Chandak, Idoia Ochoa
We combine recurrent neural network predictors with an arithmetic coder and losslessly compress a variety of synthetic, text and genomic datasets.