Search Results for author: Khalique Newaz

Found 6 papers, 1 papers with code

Towards future directions in data-integrative supervised prediction of human aging-related genes

no code implementations26 May 2022 Qi Li, Khalique Newaz, Tijana Milenković

Here, we evaluate whether analyzing a weighted dynamic aging-specific subnetwork inferred from newer GE and PPIN data improves prediction accuracy upon analyzing the best current subnetwork inferred from outdated data.

Data Integration Human Aging

Dynamic network analysis improves protein 3D structural classification

no code implementations14 May 2021 Khalique Newaz, Jacob Piland, Patricia L. Clark, Scott J. Emrich, Jun Li, Tijana Milenkovic

Here, we propose for the first time a way to model 3D structures of proteins as dynamic PSNs, with the hypothesis that this will improve upon the current state-of-the-art PSC approaches that are based on static PSNs (and thus upon the existing state-of-the-art sequence and other 3D structural approaches).

Classification

Improved supervised prediction of aging-related genes via weighted dynamic network analysis

no code implementations7 May 2020 Qi Li, Khalique Newaz, Tijana Milenković

Instead, we recently inferred a dynamic aging-specific subnetwork using a methodologically more advanced notion of network propagation (NP), which improved upon Induced dynamic aging-specific subnetwork in a different task, that of unsupervised analyses of the aging process.

Weighted graphlets and deep neural networks for protein structure classification

no code implementations7 Oct 2019 Hongyu Guo, Khalique Newaz, Scott Emrich, Tijana Milenkovic, Jun Li

We develop a weighted network that depicts the protein structures, and more importantly, we propose the first graphlet-based measure that applies to weighted networks.

Classification General Classification

Inference of the Dynamic Aging-related Biological Subnetwork via Network Propagation

no code implementations15 Jul 2018 Khalique Newaz, Tijana Milenkovic

We use prominent existing NP methods in a new task of inferring a dynamic rather than static condition-specific (aging-related) subnetwork.

Human Aging

Cannot find the paper you are looking for? You can Submit a new open access paper.