no code implementations • 1 Jan 2021 • Tim Kucera, Karsten Michael Borgwardt, Matteo Togninalli, Laetitia Papaxanthos
The availability of vast protein sequence information and rich functional annotations thereof has a large potential for protein design applications in biomedicine and synthetic biology.
no code implementations • ACL 2019 • Matt Le, Stephen Roller, Laetitia Papaxanthos, Douwe Kiela, Maximilian Nickel
Moreover -- and in contrast with other methods -- the hierarchical nature of hyperbolic space allows us to learn highly efficient representations and to improve the taxonomic consistency of the inferred hierarchies.
1 code implementation • NeurIPS 2016 • Laetitia Papaxanthos, Felipe Llinares-Lopez, Dean Bodenham, Karsten Borgwardt
In high-dimensional settings, where the number of features p is typically much larger than the number of samples n, methods which can systematically examine arbitrary combinations of features, a huge 2^p-dimensional space, have recently begun to be explored.
no code implementations • 24 Aug 2015 • Felipe Llinares-Lopez, Laetitia Papaxanthos, Dean Bodenham, Karsten Borgwardt
Significant pattern mining, the problem of finding itemsets that are significantly enriched in one class of objects, is statistically challenging, as the large space of candidate patterns leads to an enormous multiple testing problem.
no code implementations • 15 Feb 2015 • Felipe Llinares López, Mahito Sugiyama, Laetitia Papaxanthos, Karsten M. Borgwardt
Westfall-Young light opens the door to significant pattern mining on large datasets that previously led to prohibitive runtime or memory costs.