SBbadger: Biochemical Reaction Networks with Definable Degree Distributions

no code implementations • 25 Feb 2022 • Michael A. Kochen, H. Steven Wiley, Song Feng, Herbert M. Sauro

Motivation: An essential step in developing computational tools for the inference, optimization, and simulation of biochemical reaction networks is gauging tool performance against earlier efforts using an appropriate set of benchmarks.

Inference Optimization

Dynamics and Sensitivity of Signaling Pathways

1 code implementation • 13 Jun 2021 • Michael A. Kochen, Steven S. Andrews, H. Steven Wiley, Song Feng, Herbert M. Sauro

Signaling pathways serve to communicate information about extracellular conditions into the cell, to both the nucleus and cytoplasmic processes to control cell responses.