Search Results for author: Nathaniel L. Diamant

Found 2 papers, 1 papers with code

RINGER: Rapid Conformer Generation for Macrocycles with Sequence-Conditioned Internal Coordinate Diffusion

1 code implementation30 May 2023 Colin A. Grambow, Hayley Weir, Nathaniel L. Diamant, Alex M. Tseng, Tommaso Biancalani, Gabriele Scalia, Kangway V. Chuang

Macrocyclic peptides are an emerging therapeutic modality, yet computational approaches for accurately sampling their diverse 3D ensembles remain challenging due to their conformational diversity and geometric constraints.

Benchmarking

A 3D-Shape Similarity-based Contrastive Approach to Molecular Representation Learning

no code implementations3 Nov 2022 Austin Atsango, Nathaniel L. Diamant, Ziqing Lu, Tommaso Biancalani, Gabriele Scalia, Kangway V. Chuang

Molecular shape and geometry dictate key biophysical recognition processes, yet many graph neural networks disregard 3D information for molecular property prediction.

Contrastive Learning Molecular Property Prediction +3

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