Search Results for author: Colin A. Grambow

Found 3 papers, 1 papers with code

RINGER: Rapid Conformer Generation for Macrocycles with Sequence-Conditioned Internal Coordinate Diffusion

1 code implementation30 May 2023 Colin A. Grambow, Hayley Weir, Nathaniel L. Diamant, Alex M. Tseng, Tommaso Biancalani, Gabriele Scalia, Kangway V. Chuang

Macrocyclic peptides are an emerging therapeutic modality, yet computational approaches for accurately sampling their diverse 3D ensembles remain challenging due to their conformational diversity and geometric constraints.

Benchmarking

CREMP: Conformer-Rotamer Ensembles of Macrocyclic Peptides for Machine Learning

no code implementations14 May 2023 Colin A. Grambow, Hayley Weir, Christian N. Cunningham, Tommaso Biancalani, Kangway V. Chuang

Computational and machine learning approaches to model the conformational landscape of macrocyclic peptides have the potential to enable rational design and optimization.

Protein Structure Prediction

Evaluating Scalable Uncertainty Estimation Methods for DNN-Based Molecular Property Prediction

no code implementations7 Oct 2019 Gabriele Scalia, Colin A. Grambow, Barbara Pernici, Yi-Pei Li, William H. Green

Advances in deep neural network (DNN) based molecular property prediction have recently led to the development of models of remarkable accuracy and generalization ability, with graph convolution neural networks (GCNNs) reporting state-of-the-art performance for this task.

Bayesian Inference Molecular Property Prediction +2

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