no code implementations • 5 Dec 2022 • David Schaller, Tom Hartmann, Manuel Lafond, Nicolas Wieseke, Peter F. Stadler, Marc Hellmuth
The relative timing information of gene and species divergences is captured by three colored graphs that have the extant genes as vertices and the species in which the genes are found as vertex colors: the equal-divergence-time (EDT) graph, the later-divergence-time (LDT) graph and the prior-divergence-time (PDT) graph, which together form an edge partition of the complete graph.
no code implementations • 16 Dec 2020 • David Schaller, Manuel Lafond, Peter F. Stadler, Nicolas Wieseke, Marc Hellmuth
An edge in an LDT graph implies that the two corresponding genes are separated by at least one HGT event.
