An AI-Ready Multiplex Staining Dataset for Reproducible and Accurate Characterization of Tumor Immune Microenvironment

1 code implementation • 25 May 2023 • Parmida Ghahremani, Joseph Marino, Juan Hernandez-Prera, Janis V. de la Iglesia, Robbert JC Slebos, Christine H. Chung, Saad Nadeem

We introduce a new AI-ready computational pathology dataset containing restained and co-registered digitized images from eight head-and-neck squamous cell carcinoma patients.

Style Transfer

Domain Knowledge Driven 3D Dose Prediction Using Moment-Based Loss Function

1 code implementation • 7 Jul 2022 • Gourav Jhanwar, Navdeep Dahiya, Parmida Ghahremani, Masoud Zarepisheh, Saad Nadeem

Model with (MAE + Moment) loss function outperformed the model with MAE loss by significantly improving the DVH-score (11%, p$<$0. 01) while having similar computational cost.

Computed Tomography (CT)

DeepLIIF: An Online Platform for Quantification of Clinical Pathology Slides

1 code implementation • CVPR 2022 • Parmida Ghahremani, Joseph Marino, Ricardo Dodds, Saad Nadeem

In the clinic, resected tissue samples are stained with Hematoxylin-and-Eosin (H&E) and/or Immunhistochemistry (IHC) stains and presented to the pathologists on glass slides or as digital scans for diagnosis and assessment of disease progression.