no code implementations • 20 Nov 2023 • Sumukh Pinge, Weihong Xu, Jaeyoung Kang, Tianqi Zhang, Neima Moshiri, Wout Bittremieux, Tajana Rosing
This approach markedly improves clustering speed and efficiency, serving as a catalyst for real-time, high-throughput data analysis in future healthcare applications.
2 code implementations • bioRxiv 2023 • Melih Yilmaz, William E. Fondrie, Wout Bittremieux, Rowan Nelson, Varun Ananth, Sewoong Oh, William Stafford Noble
A fundamental challenge for any mass spectrometry-based proteomics experiment is the identification of the peptide that generated each acquired tandem mass spectrum.
no code implementations • 23 Sep 2021 • Richard D. LeDuc, Eric W. Deutsch, Pierre-Alain Binz, Ryan T. Fellers, Anthony J. Cesnik, Joshua A. Klein, Tim Van Den Bossche, Ralf Gabriels, Arshika Yalavarthi, Yasset Perez-Riverol, Jeremy Carver, Wout Bittremieux, Shin Kawano, Benjamin Pullman, Nuno Bandeira, Neil L. Kelleher, Paul M. Thomas, Juan Antonio Vizcaíno
There is the need to represent in a standard manner all the possible variations of a protein or peptide primary sequence, including both artefactual and post-translational modifications of peptides and proteins.