Search Results for author: Wout Bittremieux

Found 3 papers, 1 papers with code

SpecHD: Hyperdimensional Computing Framework for FPGA-based Mass Spectrometry Clustering

no code implementations20 Nov 2023 Sumukh Pinge, Weihong Xu, Jaeyoung Kang, Tianqi Zhang, Neima Moshiri, Wout Bittremieux, Tajana Rosing

This approach markedly improves clustering speed and efficiency, serving as a catalyst for real-time, high-throughput data analysis in future healthcare applications.

Clustering

Sequence-to-sequence translation from mass spectra to peptides with a transformer model

2 code implementations bioRxiv 2023 Melih Yilmaz, William E. Fondrie, Wout Bittremieux, Rowan Nelson, Varun Ananth, Sewoong Oh, William Stafford Noble

A fundamental challenge for any mass spectrometry-based proteomics experiment is the identification of the peptide that generated each acquired tandem mass spectrum.

de novo peptide sequencing

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