no code implementations • 25 Sep 2021 • Mario Flores, Zhentao Liu, Ting-He Zhang, Md Musaddaqui Hasib, Yu-Chiao Chiu, Zhenqing Ye, Karla Paniagua, Sumin Jo, Jianqiu Zhang, Shou-Jiang Gao, Yu-Fang Jin, Yidong Chen, Yufei Huang
Here we present a processing pipeline of single-cell RNA-seq data, survey a total of 25 DL algorithms and their applicability for a specific step in the processing pipeline.
1 code implementation • 18 Jun 2019 • Milad Mostavi, Yu-Chiao Chiu, Yufei Huang, Yidong Chen
In breast cancer, for instance, our model identified well-known markers, such as GATA3 and ESR1.
no code implementations • 21 May 2018 • Hung-I Harry Chen, Yu-Chiao Chiu, Tinghe Zhang, Songyao Zhang, Yufei Huang, Yidong Chen
We introduced the concept of the gene superset, an unbiased combination of gene sets with weights trained by the autoencoder, where each node in the latent layer is a superset.
1 code implementation • 20 May 2018 • Yu-Chiao Chiu, Hung-I Harry Chen, Tinghe Zhang, Songyao Zhang, Aparna Gorthi, Li-Ju Wang, Yufei Huang, Yidong Chen
We trained and tested the model on a dataset of 622 cancer cell lines and achieved an overall prediction performance of mean squared error at 1. 96 (log-scale IC50 values).