Vaxformer: Antigenicity-controlled Transformer for Vaccine Design Against SARS-CoV-2

1 code implementation • 18 May 2023 • Aryo Pradipta Gema, Michał Kobiela, Achille Fraisse, Ajitha Rajan, Diego A. Oyarzún, Javier Antonio Alfaro

The SARS-CoV-2 pandemic has emphasised the importance of developing a universal vaccine that can protect against current and future variants of the virus.

Protein Language Model

Opportunities at the interface of network science and metabolic modelling

no code implementations • 5 Jun 2020 • Varshit Dusad, Denise Thiel, Mauricio Barahona, Hector C. Keun, Diego A. Oyarzún

Here we discuss the roles of two complementary strategies for the analysis of genome-scale metabolic models: Flux Balance Analysis (FBA) and network science.

Prediction of cellular burden with host-circuit models

no code implementations • 2 Apr 2020 • Evangelos-Marios Nikolados, Andrea Y. Weiße, Diego A. Oyarzún

In this tutorial we discuss the use of computational models that integrate gene circuits and the physiology of host cells.

Robust Design