Search Results for author: Jenna A. Bilbrey

Found 5 papers, 4 papers with code

Reducing Down(stream)time: Pretraining Molecular GNNs using Heterogeneous AI Accelerators

1 code implementation8 Nov 2022 Jenna A. Bilbrey, Kristina M. Herman, Henry Sprueill, Soritis S. Xantheas, Payel Das, Manuel Lopez Roldan, Mike Kraus, Hatem Helal, Sutanay Choudhury

The demonstrated success of transfer learning has popularized approaches that involve pretraining models from massive data sources and subsequent finetuning towards a specific task.

Transfer Learning

Decoding the Protein-ligand Interactions Using Parallel Graph Neural Networks

1 code implementation30 Nov 2021 Carter Knutson, Mridula Bontha, Jenna A. Bilbrey, Neeraj Kumar

These models are further adapted for regression tasks to predict experimental binding affinities and pIC50 is crucial for drugs potency and efficacy.

Explainable artificial intelligence

Geometric learning of the conformational dynamics of molecules using dynamic graph neural networks

1 code implementation24 Jun 2021 Michael Hunter Ashby, Jenna A. Bilbrey

We apply a temporal edge prediction model for weighted dynamic graphs to predict time-dependent changes in molecular structure.

HydroNet: Benchmark Tasks for Preserving Intermolecular Interactions and Structural Motifs in Predictive and Generative Models for Molecular Data

no code implementations30 Nov 2020 Sutanay Choudhury, Jenna A. Bilbrey, Logan Ward, Sotiris S. Xantheas, Ian Foster, Joseph P. Heindel, Ben Blaiszik, Marcus E. Schwarting

Intermolecular and long-range interactions are central to phenomena as diverse as gene regulation, topological states of quantum materials, electrolyte transport in batteries, and the universal solvation properties of water.

BIG-bench Machine Learning

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