Analysis and Validation of Image Search Engines in Histopathology

no code implementations • 6 Jan 2024 • Isaiah Lahr, Saghir Alfasly, Peyman Nejat, Jibran Khan, Luke Kottom, Vaishnavi Kumbhar, Areej Alsaafin, Abubakr Shafique, Sobhan Hemati, Ghazal Alabtah, Nneka Comfere, Dennis Murphee, Aaron Mangold, Saba Yasir, Chady Meroueh, Lisa Boardman, Vijay H. Shah, Joaquin J. Garcia, H. R. Tizhoosh

Searching for similar images in archives of histology and histopathology images is a crucial task that may aid in patient matching for various purposes, ranging from triaging and diagnosis to prognosis and prediction.

Image Retrieval whole slide images

Creating an Atlas of Normal Tissue for Pruning WSI Patching Through Anomaly Detection

no code implementations • 4 Oct 2023 • Peyman Nejat, Areej Alsaafin, Ghazal Alabtah, Nneka Comfere, Aaron Mangold, Dennis Murphree, Patricija Zot, Saba Yasir, Joaquin J. Garcia, H. R. Tizhoosh

While most of the computational pathology tasks are designed to classify or detect the presence of pathological lesions in each WSI, the confounding role and redundant nature of normal histology in tissue samples are generally overlooked in WSI representations.

Anomaly Detection whole slide images

When is a Foundation Model a Foundation Model

no code implementations • 14 Sep 2023 • Saghir Alfasly, Peyman Nejat, Sobhan Hemati, Jibran Khan, Isaiah Lahr, Areej Alsaafin, Abubakr Shafique, Nneka Comfere, Dennis Murphree, Chady Meroueh, Saba Yasir, Aaron Mangold, Lisa Boardman, Vijay Shah, Joaquin J. Garcia, H. R. Tizhoosh

Recently, several studies have reported on the fine-tuning of foundation models for image-text modeling in the field of medicine, utilizing images from online data sources such as Twitter and PubMed.

Retrieval