Search Results for author: Michal Byra

Found 12 papers, 2 papers with code

Implicit neural representations for joint decomposition and registration of gene expression images in the marmoset brain

1 code implementation8 Aug 2023 Michal Byra, Charissa Poon, Tomomi Shimogori, Henrik Skibbe

We propose a novel image registration method based on implicit neural representations that addresses the challenging problem of registering a pair of brain images with similar anatomical structures, but where one image contains additional features or artifacts that are not present in the other image.

Image Registration

An automated pipeline to create an atlas of in situ hybridization gene expression data in the adult marmoset brain

1 code implementation13 Mar 2023 Charissa Poon, Muhammad Febrian Rachmadi, Michal Byra, Matthias Schlachter, Binbin Xu, Tomomi Shimogori, Henrik Skibbe

We present the first automated pipeline to create an atlas of in situ hybridization gene expression in the adult marmoset brain in the same stereotaxic space.

Segmentation

Deep meta-learning for the selection of accurate ultrasound based breast mass classifier

no code implementations3 Nov 2022 Michal Byra, Piotr Karwat, Ivan Ryzhankow, Piotr Komorowski, Ziemowit Klimonda, Lukasz Fura, Anna Pawlowska, Norbert Zolek, Jerzy Litniewski

Standard classification methods based on handcrafted morphological and texture features have achieved good performance in breast mass differentiation in ultrasound (US).

Meta-Learning

Parameter estimation of the homodyned K distribution based on neural networks and trainable fractional-order moments

no code implementations11 Oct 2022 Michal Byra, Ziemowit Klimonda, Piotr Jarosik

We develop neural networks that can estimate the HK distribution parameters based on the signal-to-noise ratio, skewness and kurtosis calculated using fractional-order moments.

Estimating the ultrasound attenuation coefficient using convolutional neural networks -- a feasibility study

no code implementations19 May 2022 Piotr Jarosik, Michal Byra, Marcin Lewandowski, Ziemowit Klimonda

Attenuation coefficient (AC) is a fundamental measure of tissue acoustical properties, which can be used in medical diagnostics.

Knee menisci segmentation and relaxometry of 3D ultrashort echo time (UTE) cones MR imaging using attention U-Net with transfer learning

no code implementations5 Aug 2019 Michal Byra, Mei Wu, Xiaodong Zhang, Hyungseok Jang, Ya-Jun Ma, Eric Y Chang, Sameer Shah, Jiang Du

Next, the T1, T1$\rho$, T2* relaxations, and ROI areas were determined for the manual and automatic segmentations, then compared. The models developed using ROIs provided by two radiologists achieved high Dice scores of 0. 860 and 0. 833, while the radiologists' manual segmentations achieved a Dice score of 0. 820.

Segmentation Transfer Learning

Breast mass classification in ultrasound based on Kendall's shape manifold

no code implementations27 May 2019 Michal Byra, Michael Andre

While benign breast masses tend to have a well-defined ellipsoidal contour, shape of malignant breast masses is commonly ill-defined and highly variable.

Classification Feature Engineering +1

Cannot find the paper you are looking for? You can Submit a new open access paper.