Search Results for author: Morteza Babaie

Found 21 papers, 1 papers with code

On Philomatics and Psychomatics for Combining Philosophy and Psychology with Mathematics

no code implementations26 Aug 2023 Benyamin Ghojogh, Morteza Babaie

We enumerate various examples for philomatics and psychomatics, some of which are explained in more depth.

Philosophy Relation

Composite Biomarker Image for Advanced Visualization in Histopathology

no code implementations24 Apr 2023 Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, Adrian Batten, Soma Sikdar, H. R. Tizhoosh

In the first step, IHC biomarker images are aligned with the H&E images using one coordinate system and orientation.

whole slide images

Immunohistochemistry Biomarkers-Guided Image Search for Histopathology

no code implementations24 Apr 2023 Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, H. R. Tizhoosh

In this work, we are proposing a targeted image search approach, inspired by the pathologists workflow, which may use information from multiple IHC biomarker images when available.

Image Retrieval

Automatic Multi-Stain Registration of Whole Slide Images in Histopathology

no code implementations29 Jul 2021 Abubakr Shafique, Morteza Babaie, Mahjabin Sajadi, Adrian Batten, Soma Skdar, H. R. Tizhoosh

The registration was performed automatically by first detecting landmarks in both images, using the scale-invariant image transform (SIFT), followed by the fast sample consensus (FSC) protocol for finding point correspondences and finally aligned the images.

Translation whole slide images

Colored Kimia Path24 Dataset: Configurations and Benchmarks with Deep Embeddings

no code implementations15 Feb 2021 Sobhan Shafiei, Morteza Babaie, Shivam Kalra, H. R. Tizhoosh

The Kimia Path24 dataset has been introduced as a classification and retrieval dataset for digital pathology.

Image Retrieval Retrieval

Ink Marker Segmentation in Histopathology Images Using Deep Learning

no code implementations29 Oct 2020 Danial Maleki, Mehdi Afshari, Morteza Babaie, H. R. Tizhoosh

The quality of the images can be negatively affected when the glass slides are ink-marked by pathologists to delineate regions of interest.

Cross-Modal Retrieval whole slide images

Forming Local Intersections of Projections for Classifying and Searching Histopathology Images

no code implementations8 Aug 2020 Aditya Sriram, Shivam Kalra, Morteza Babaie, Brady Kieffer, Waddah Al Drobi, Shahryar Rahnamayan, Hany Kashani, Hamid. R. Tizhoosh

In this paper, we propose a novel image descriptor called Forming Local Intersections of Projections (FLIP) and its multi-resolution version (mFLIP) for representing histopathology images.

A new Local Radon Descriptor for Content-Based Image Search

no code implementations30 Jul 2020 Morteza Babaie, Hany Kashani, Meghana D. Kumar, Hamid. R. Tizhoosh

Content-based image retrieval (CBIR) is an essential part of computer vision research, especially in medical expert systems.

Content-Based Image Retrieval Retrieval

Recognizing Magnification Levels in Microscopic Snapshots

no code implementations7 May 2020 Manit Zaveri, Shivam Kalra, Morteza Babaie, Sultaan Shah, Savvas Damskinos, Hany Kashani, H. R. Tizhoosh

In this paper, we extract deep features of the images available on TCGA dataset with known magnification to train a classifier for magnification recognition.

Subtractive Perceptrons for Learning Images: A Preliminary Report

no code implementations15 Sep 2019 H. R. Tizhoosh, Shivam Kalra, Shalev Lifshitz, Morteza Babaie

In recent years, artificial neural networks have achieved tremendous success for many vision-based tasks.

Deep Features for Tissue-Fold Detection in Histopathology Images

no code implementations17 Mar 2019 Morteza Babaie, H. R. Tizhoosh

Whole slide imaging (WSI) refers to the digitization of a tissue specimen which enables pathologists to explore high-resolution images on a monitor rather than through a microscope.

Patch Clustering for Representation of Histopathology Images

no code implementations17 Mar 2019 Wafa Chenni, Habib Herbi, Morteza Babaie, H. R. Tizhoosh

The main contribution of this work is representing a WSI by selecting a small number of patches for algorithmic processing (e. g., indexing and search).

Clustering Retrieval

Deep Barcodes for Fast Retrieval of Histopathology Scans

no code implementations30 Apr 2018 Meghana Dinesh Kumar, Morteza Babaie, Hamid Tizhoosh

We investigate the concept of deep barcodes and propose two methods to generate them in order to expedite the process of classification and retrieval of histopathology images.

General Classification Image Retrieval +1

Local Radon Descriptors for Image Search

no code implementations11 Oct 2017 Morteza Babaie, H. R. Tizhoosh, Amin Khatami, M. E. Shiri

This paper attempts to show that the dense sampling to generate the histogram of local Radon projections has a much higher discrimination capability than the global one.

Medical Image Retrieval Retrieval

Convolutional Neural Networks for Histopathology Image Classification: Training vs. Using Pre-Trained Networks

no code implementations11 Oct 2017 Brady Kieffer, Morteza Babaie, Shivam Kalra, H. R. Tizhoosh

We explore the problem of classification within a medical image data-set based on a feature vector extracted from the deepest layer of pre-trained Convolution Neural Networks.

General Classification Image Classification +2

A Comparative Study of CNN, BoVW and LBP for Classification of Histopathological Images

no code implementations27 Sep 2017 Meghana Dinesh Kumar, Morteza Babaie, Shujin Zhu, Shivam Kalra, H. R. Tizhoosh

This paper is a comparative study describing the potential of using local binary patterns (LBP), deep features and the bag-of-visual words (BoVW) scheme for the classification of histopathological images.

Classification General Classification +1

Retrieving Similar X-Ray Images from Big Image Data Using Radon Barcodes with Single Projections

no code implementations2 Jan 2017 Morteza Babaie, H. R. Tizhoosh, Shujin Zhu, M. E. Shiri

Our method (Single Projection Radon Barcode, or SP-RBC) uses only a few Radon single projections for each image as global features that can serve as a basis for weak learners.

Content-Based Image Retrieval Retrieval

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