Search Results for author: Victor Greiff

Found 8 papers, 4 papers with code

Best practices for machine learning in antibody discovery and development

no code implementations13 Dec 2023 Leonard Wossnig, Norbert Furtmann, Andrew Buchanan, Sandeep Kumar, Victor Greiff

Over the past few years, we have observed rapid developments in the field of ML-guided antibody discovery and development (D&D).

ImmunoLingo: Linguistics-based formalization of the antibody language

no code implementations26 Sep 2022 Mai Ha Vu, Philippe A. Robert, Rahmad Akbar, Bartlomiej Swiatczak, Geir Kjetil Sandve, Dag Trygve Truslew Haug, Victor Greiff

It would facilitate a better understanding of how differences and similarities between natural language and biological sequences influence the quality of LMs, which is crucial for the design of interpretable models with extractable sequence-functions relationship rules, such as the ones underlying the antibody specificity prediction problem.

Specificity

Linguistically inspired roadmap for building biologically reliable protein language models

no code implementations3 Jul 2022 Mai Ha Vu, Rahmad Akbar, Philippe A. Robert, Bartlomiej Swiatczak, Victor Greiff, Geir Kjetil Sandve, Dag Trygve Truslew Haug

Differences between protein sequence data and linguistic sequence data require the integration of more domain-specific knowledge in protein LMs compared to natural language LMs.

Interpretable Machine Learning

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