1 code implementation • 24 Nov 2021 • Francesco Craighero, Fabrizio Angaroni, Fabio Stella, Chiara Damiani, Marco Antoniotti, Alex Graudenzi
A key challenge in computer vision and deep learning is the definition of robust strategies for the detection of adversarial examples.
1 code implementation • 13 Oct 2021 • Fabrizio Angaroni, Marco Antoniotti, Alex Graudenzi
We introduce the Optimized Gillespie algorithm for simulating Stochastic sPAtial models of Cancer Evolution (OG-SPACE), a computational framework for the simulation of the spatio-temporal evolution of cancer subpopulations and of the experimental procedures of both bulk andsingle-cell sequencing.
no code implementations • 17 Feb 2020 • Francesco Craighero, Fabrizio Angaroni, Alex Graudenzi, Fabio Stella, Marco Antoniotti
By defining a direct acyclic graph representing the composition of activation patterns through the network layers, it is possible to characterize the instances of the input data with respect to both the predicted label and the specific (linear) transformation used to perform predictions.
1 code implementation • 4 Sep 2017 • Daniele Ramazzotti, Alex Graudenzi, Luca De Sano, Marco Antoniotti, Giulio Caravagna
Compared to other tools, TRaIT supports multi-region and single-cell sequencing data within the same statistical framework, and delivers expressive models that capture many complex evolutionary phenomena.
2 code implementations • 8 May 2017 • Lucrezia Patruno, Edoardo Galimberti, Daniele Ramazzotti, Giulio Caravagna, Luca De Sano, Marco Antoniotti, Alex Graudenzi
cyTRON was developed in Java; the code is available at https://github. com/BIMIB-DISCo/cyTRON and on the Cytoscape App Store http://apps. cytoscape. org/apps/cytron.
no code implementations • 8 Mar 2017 • Daniele Ramazzotti, Marco S. Nobile, Marco Antoniotti, Alex Graudenzi
In this work, we focus on a specific subclass of BNs, named Suppes-Bayes Causal Networks (SBCNs), which include specific structural constraints based on Suppes' probabilistic causation to efficiently model cumulative phenomena.
no code implementations • 25 Feb 2016 • Daniele Ramazzotti, Alex Graudenzi, Giulio Caravagna, Marco Antoniotti
Several diseases related to cell proliferation are characterized by the accumulation of somatic DNA changes, with respect to wildtype conditions.
2 code implementations • 26 Aug 2014 • Fabrizio Angaroni, Kevin Chen, Chiara Damiani, Giulio Caravagna, Alex Graudenzi, Daniele Ramazzotti
Motivation: Driver (epi)genomic alterations underlie the positive selection of cancer subpopulations, which promotes drug resistance and relapse.
no code implementations • 27 Sep 2013 • Alex Graudenzi, Giulio Caravagna, Giancarlo Mauri, Marco Antoniotti
The Wivace 2013 Electronic Proceedings in Theoretical Computer Science (EPTCS) contain some selected long and short articles accepted for the presentation at Wivace 2013 - Italian Workshop on Artificial Life and Evolutionary Computation, which was held at the University of Milan-Bicocca, Milan, on the 1st and 2nd of July, 2013.