no code implementations • 8 Apr 2021 • Mostafa Mehdipour Ghazi, Lauge Sørensen, Sébastien Ourselin, Mads Nielsen
Learning temporal patterns from multivariate longitudinal data is challenging especially in cases when data is sporadic, as often seen in, e. g., healthcare applications where the data can suffer from irregularity and asynchronicity as the time between consecutive data points can vary across features and samples, hindering the application of existing deep learning models that are constructed for complete, evenly spaced data with fixed sequence lengths.
no code implementations • 16 Aug 2019 • Mauricio Orbes-Arteaga, Thomas Varsavsky, Carole H. Sudre, Zach Eaton-Rosen, Lewis J. Haddow, Lauge Sørensen, Mads Nielsen, Akshay Pai, Sébastien Ourselin, Marc Modat, Parashkev Nachev, M. Jorge Cardoso
Inspired by recent work in semi-supervised learning we introduce a novel method to adapt from one source domain to $n$ target domains (as long as there is paired data covering all domains).
no code implementations • 16 Aug 2019 • Mauricio Orbes-Arteaga, Jorge Cardoso, Lauge Sørensen, Christian Igel, Sebastien Ourselin, Marc Modat, Mads Nielsen, Akshay Pai
As a result, their performance is significantly lower on data from unseen sources compared to the performance on data from the same source as the training data.
no code implementations • 14 Aug 2019 • Mostafa Mehdipour Ghazi, Mads Nielsen, Akshay Pai, Marc Modat, M. Jorge Cardoso, Sébastien Ourselin, Lauge Sørensen
Different M-estimators and logistic functions, including a novel type proposed in this study, called modified Stannard, are evaluated on the data from the Alzheimer's Disease Neuroimaging Initiative (ADNI) for robust modeling of volumetric MRI and PET biomarkers, CSF measurements, as well as cognitive tests.
no code implementations • 17 Mar 2019 • Mostafa Mehdipour Ghazi, Mads Nielsen, Akshay Pai, M. Jorge Cardoso, Marc Modat, Sebastien Ourselin, Lauge Sørensen
The proposed LSTM algorithm is applied to model the progression of Alzheimer's disease (AD) using six volumetric magnetic resonance imaging (MRI) biomarkers, i. e., volumes of ventricles, hippocampus, whole brain, fusiform, middle temporal gyrus, and entorhinal cortex, and it is compared to standard LSTM networks with data imputation and a parametric, regression-based DPM method.
no code implementations • 3 Oct 2018 • Mauricio Orbes Arteaga, Lauge Sørensen, M. Jorge Cardoso, Marc Modat, Sebastien Ourselin, Stefan Sommer, Mads Nielsen, Christian Igel, Akshay Pai
For proper generalization performance of convolutional neural networks (CNNs) in medical image segmentation, the learnt features should be invariant under particular non-linear shape variations of the input.
no code implementations • 20 Aug 2018 • Mauricio Orbes-Arteaga, M. Jorge Cardoso, Lauge Sørensen, Marc Modat, Sébastien Ourselin, Mads Nielsen, Akshay Pai
Segmenting vascular pathologies such as white matter lesions in Brain magnetic resonance images (MRIs) require acquisition of multiple sequences such as T1-weighted (T1-w) --on which lesions appear hypointense-- and fluid attenuated inversion recovery (FLAIR) sequence --where lesions appear hyperintense--.
no code implementations • 16 Aug 2018 • Mostafa Mehdipour Ghazi, Mads Nielsen, Akshay Pai, M. Jorge Cardoso, Marc Modat, Sebastien Ourselin, Lauge Sørensen
This paper shows that built-in handling of missing values in LSTM network training paves the way for application of RNNs in disease progression modeling.
no code implementations • 1 May 2017 • Akshay Pai, Stefan Sommer, Lars Lau Raket, Line Kühnel, Sune Darkner, Lauge Sørensen, Mads Nielsen
Template estimation plays a crucial role in computational anatomy since it provides reference frames for performing statistical analysis of the underlying anatomical population variability.
no code implementations • 15 Mar 2017 • Veronika Cheplygina, Lauge Sørensen, David M. J. Tax, Marleen de Bruijne, Marco Loog
We address the problem of \emph{instance label stability} in multiple instance learning (MIL) classifiers.
no code implementations • 15 Mar 2017 • Veronika Cheplygina, Lauge Sørensen, David M. J. Tax, Jesper Holst Pedersen, Marco Loog, Marleen de Bruijne
Chronic obstructive pulmonary disease (COPD) is a lung disease where early detection benefits the survival rate.
no code implementations • 18 Jan 2017 • Veronika Cheplygina, Isabel Pino Peña, Jesper Holst Pedersen, David A. Lynch, Lauge Sørensen, Marleen de Bruijne
We show that Gaussian texture features outperform intensity features previously used in multi-center classification tasks.