Search Results for author: Joseph Jacob

Found 21 papers, 15 papers with code

CenTime: Event-Conditional Modelling of Censoring in Survival Analysis

2 code implementations7 Sep 2023 Ahmed H. Shahin, An Zhao, Alexander C. Whitehead, Daniel C. Alexander, Joseph Jacob, David Barber

We demonstrate that our approach forms a consistent estimator for the event model parameters, even in the absence of uncensored data.

Survival Analysis

Expectation Maximization Pseudo Labels

1 code implementation2 May 2023 MouCheng Xu, Yukun Zhou, Chen Jin, Marius de Groot, Daniel C. Alexander, Neil P. Oxtoby, Yipeng Hu, Joseph Jacob

In the remainder of the paper, we showcase the applications of pseudo-labelling and its generalised form, Bayesian Pseudo-Labelling, in the semi-supervised segmentation of medical images.

Segmentation

Airway measurement by refinement of synthetic images improves mortality prediction in idiopathic pulmonary fibrosis

1 code implementation30 Aug 2022 Ashkan Pakzad, Mou-Cheng Xu, Wing Keung Cheung, Marie Vermant, Tinne Goos, Laurens J De Sadeleer, Stijn E Verleden, Wim A Wuyts, John R Hurst, Joseph Jacob

We compare our ATN model with a state-of-the-art GAN-based network (simGAN) using a) qualitative assessment; b) assessment of the ability of ATN and simGAN based CT airway metrics to predict mortality in a population of 113 patients with IPF.

Computed Tomography (CT) Mortality Prediction +1

Enhancing Cancer Prediction in Challenging Screen-Detected Incident Lung Nodules Using Time-Series Deep Learning

no code implementations30 Mar 2022 Shahab Aslani, Pavan Alluri, Eyjolfur Gudmundsson, Edward Chandy, John McCabe, Anand Devaraj, Carolyn Horst, Sam M Janes, Rahul Chakkara, Arjun Nair, Daniel C Alexander, SUMMIT consortium, Joseph Jacob

Our model demonstrated comparable and complementary performance to radiologists when interpreting challenging lung nodules and showed improved performance (AUC=88\%) against models utilizing single time-point data only.

Computed Tomography (CT) Management +2

Survival Analysis for Idiopathic Pulmonary Fibrosis using CT Images and Incomplete Clinical Data

2 code implementations21 Mar 2022 Ahmed H. Shahin, Joseph Jacob, Daniel C. Alexander, David Barber

To this end, we propose a probabilistic model that captures the dependencies between the observed clinical variables and imputes missing ones.

Imputation Survival Analysis

Learning Morphological Feature Perturbations for Calibrated Semi-Supervised Segmentation

1 code implementation19 Mar 2022 Mou-Cheng Xu, Yu-Kun Zhou, Chen Jin, Stefano B Blumberg, Frederick J Wilson, Marius deGroot, Daniel C. Alexander, Neil P. Oxtoby, Joseph Jacob

We propose MisMatch, a novel consistency-driven semi-supervised segmentation framework which produces predictions that are invariant to learnt feature perturbations.

Segmentation

MisMatch: Calibrated Segmentation via Consistency on Differential Morphological Feature Perturbations with Limited Labels

2 code implementations23 Oct 2021 Mou-Cheng Xu, Yukun Zhou, Chen Jin, Marius de Groot, Neil P. Oxtoby, Daniel C. Alexander, Joseph Jacob

The state-of-the-art SSL methods in image classification utilise consistency regularisation to learn unlabelled predictions which are invariant to input level perturbations.

Image Classification Image Segmentation +4

Learning to Address Intra-segment Misclassification in Retinal Imaging

2 code implementations25 Apr 2021 Yukun Zhou, MouCheng Xu, Yipeng Hu, Hongxiang Lin, Joseph Jacob, Pearse A. Keane, Daniel C. Alexander

Accurate multi-class segmentation is a long-standing challenge in medical imaging, especially in scenarios where classes share strong similarity.

Retinal Vessel Segmentation Segmentation

Disentangling Human Error from Ground Truth in Segmentation of Medical Images

1 code implementation NeurIPS 2020 Le Zhang, Ryutaro Tanno, MouCheng Xu, Chen Jin, Joseph Jacob, Olga Cicarrelli, Frederik Barkhof, Daniel Alexander

In all cases, our method outperforms competing methods and relevant baselines particularly in cases where the number of annotations is small and the amount of disagreement is large.

Medical Image Segmentation Segmentation

Learning To Pay Attention To Mistakes

1 code implementation29 Jul 2020 Mou-Cheng Xu, Neil P. Oxtoby, Daniel C. Alexander, Joseph Jacob

We compared our methods with state-of-the-art attention mechanisms in medical imaging, including self-attention, spatial-attention and spatial-channel mixed attention.

Image Segmentation Medical Image Segmentation +1

The challenges of deploying artificial intelligence models in a rapidly evolving pandemic

no code implementations19 May 2020 Yipeng Hu, Joseph Jacob, Geoffrey JM Parker, David J. Hawkes, John R. Hurst, Danail Stoyanov

The COVID-19 pandemic, caused by the severe acute respiratory syndrome coronavirus 2, emerged into a world being rapidly transformed by artificial intelligence (AI) based on big data, computational power and neural networks.

COVID-19 Diagnosis Drug Discovery +1

Reproducibility of an airway tapering measurement in CT with application to bronchiectasis

1 code implementation16 Sep 2019 Kin Quan, Ryutaro Tanno, Rebecca J. Shipley, Jeremy S. Brown, Joseph Jacob, John R. Hurst, David J. Hawkes

Purpose: This paper proposes a pipeline to acquire a scalar tapering measurement from the carina to the most distal point of an individual airway visible on CT. We show the applicability of using tapering measurements on clinically acquired data by quantifying the reproducibility of the tapering measure.

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