Search Results for author: Benjamin Billot

Found 13 papers, 8 papers with code

SE(3)-Equivariant and Noise-Invariant 3D Rigid Motion Tracking in Brain MRI

1 code implementation21 Dec 2023 Benjamin Billot, Neel Dey, Daniel Moyer, Malte Hoffmann, Esra Abaci Turk, Borjan Gagoski, Ellen Grant, Polina Golland

Here we propose EquiTrack, the first method that uses recent steerable SE(3)-equivariant CNNs (E-CNN) for motion tracking.

Time Series

Domain-agnostic segmentation of thalamic nuclei from joint structural and diffusion MRI

no code implementations5 May 2023 Henry F. J. Tregidgo, Sonja Soskic, Mark D. Olchanyi, Juri Althonayan, Benjamin Billot, Chiara Maffei, Polina Golland, Anastasia Yendiki, Daniel C. Alexander, Martina Bocchetta, Jonathan D. Rohrer, Juan Eugenio Iglesias

Some tools have attempted to incorporate information from diffusion MRI in the segmentation to refine these boundaries, but do not generalise well across diffusion MRI acquisitions.

Segmentation

Robust machine learning segmentation for large-scale analysis of heterogeneous clinical brain MRI datasets

1 code implementation5 Sep 2022 Benjamin Billot, Colin Magdamo, You Cheng, Steven E. Arnold, Sudeshna Das, Juan. E. Iglesias

Every year, millions of brain MRI scans are acquired in hospitals, which is a figure considerably larger than the size of any research dataset.

Brain Segmentation Segmentation

Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining

2 code implementations3 Mar 2022 Benjamin Billot, Magdamo Colin, Sean E. Arnold, Sudeshna Das, Juan. E. Iglesias

We show that this method is considerably more robust than SynthSeg, while also outperforming cascaded networks and state-of-the-art segmentation denoising methods.

Denoising Image Segmentation +2

Accurate super-resolution low-field brain MRI

no code implementations7 Feb 2022 Juan Eugenio Iglesias, Riana Schleicher, Sonia Laguna, Benjamin Billot, Pamela Schaefer, Brenna McKaig, Joshua N. Goldstein, Kevin N. Sheth, Matthew S. Rosen, W. Taylor Kimberly

To address this challenge, recent advances in machine learning facilitate the synthesis of higher resolution images derived from one or multiple lower resolution scans.

Image Enhancement Super-Resolution

Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast

1 code implementation24 Dec 2020 Juan Eugenio Iglesias, Benjamin Billot, Yael Balbastre, Azadeh Tabari, John Conklin, Daniel C. Alexander, Polina Golland, Brian L. Edlow, Bruce Fischl

Most existing algorithms for automatic 3D morphometry of human brain MRI scans are designed for data with near-isotropic voxels at approximately 1 mm resolution, and frequently have contrast constraints as well - typically requiring T1 scans (e. g., MP-RAGE).

Image Registration Skull Stripping +1

Partial Volume Segmentation of Brain MRI Scans of any Resolution and Contrast

2 code implementations21 Apr 2020 Benjamin Billot, Eleanor D. Robinson, Adrian V. Dalca, Juan Eugenio Iglesias

Partial voluming (PV) is arguably the last crucial unsolved problem in Bayesian segmentation of brain MRI with probabilistic atlases.

A Learning Strategy for Contrast-agnostic MRI Segmentation

3 code implementations MIDL 2019 Benjamin Billot, Douglas Greve, Koen van Leemput, Bruce Fischl, Juan Eugenio Iglesias, Adrian V. Dalca

These samples are produced using the generative model of the classical Bayesian segmentation framework, with randomly sampled parameters for appearance, deformation, noise, and bias field.

Brain Segmentation MRI segmentation +2

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