Search Results for author: Szymon Płotka

Found 15 papers, 7 papers with code

Underestimation of lung regions on chest X-ray segmentation masks assessed by comparison with total lung volume evaluated on computed tomography

no code implementations18 Feb 2024 Przemysław Bombiński, Patryk Szatkowski, Bartłomiej Sobieski, Tymoteusz Kwieciński, Szymon Płotka, Mariusz Adamek, Marcin Banasiuk, Mariusz I. Furmanek, Przemysław Biecek

We show, that lung X-ray masks created by following the contours of the heart, mediastinum, and diaphragm significantly underestimate lung regions and exclude substantial portions of the lungs from further assessment, which may result in numerous clinical errors.

Computed Tomography (CT)

TabAttention: Learning Attention Conditionally on Tabular Data

1 code implementation27 Oct 2023 Michal K. Grzeszczyk, Szymon Płotka, Beata Rebizant, Katarzyna Kosińska-Kaczyńska, Michał Lipa, Robert Brawura-Biskupski-Samaha, Przemysław Korzeniowski, Tomasz Trzciński, Arkadiusz Sitek

In this paper, we introduce TabAttention, a novel module that enhances the performance of Convolutional Neural Networks (CNNs) with an attention mechanism that is trained conditionally on tabular data.

Why is the winner the best?

no code implementations CVPR 2023 Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, Ali Emre Kavur, Oldřich Kodym, Michal Kozubek, Jianning Li, Hongwei Li, Jun Ma, Carlos Martín-Isla, Bjoern Menze, Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, Jonathan Rafael-Patiño, Vivek Singh Bawa, Stefanie Speidel, Carole H. Sudre, Kimberlin Van Wijnen, Martin Wagner, Donglai Wei, Amine Yamlahi, Moi Hoon Yap, Chun Yuan, Maximilian Zenk, Aneeq Zia, David Zimmerer, Dogu Baran Aydogan, Binod Bhattarai, Louise Bloch, Raphael Brüngel, Jihoon Cho, Chanyeol Choi, Qi Dou, Ivan Ezhov, Christoph M. Friedrich, Clifton Fuller, Rebati Raman Gaire, Adrian Galdran, Álvaro García Faura, Maria Grammatikopoulou, SeulGi Hong, Mostafa Jahanifar, Ikbeom Jang, Abdolrahim Kadkhodamohammadi, Inha Kang, Florian Kofler, Satoshi Kondo, Hugo Kuijf, Mingxing Li, Minh Huan Luu, Tomaž Martinčič, Pedro Morais, Mohamed A. Naser, Bruno Oliveira, David Owen, Subeen Pang, Jinah Park, Sung-Hong Park, Szymon Płotka, Elodie Puybareau, Nasir Rajpoot, Kanghyun Ryu, Numan Saeed, Adam Shephard, Pengcheng Shi, Dejan Štepec, Ronast Subedi, Guillaume Tochon, Helena R. Torres, Helene Urien, João L. Vilaça, Kareem Abdul Wahid, Haojie Wang, Jiacheng Wang, Liansheng Wang, Xiyue Wang, Benedikt Wiestler, Marek Wodzinski, Fangfang Xia, Juanying Xie, Zhiwei Xiong, Sen yang, Yanwu Yang, Zixuan Zhao, Klaus Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein

The "typical" lead of a winning team is a computer scientist with a doctoral degree, five years of experience in biomedical image analysis, and four years of experience in deep learning.

Benchmarking Multi-Task Learning

Virtual Reality Simulator for Fetoscopic Spina Bifida Repair Surgery

no code implementations30 Jul 2022 Przemysław Korzeniowski, Szymon Płotka, Robert Brawura-Biskupski-Samaha, Arkadiusz Sitek

Spina Bifida (SB) is a birth defect developed during the early stage of pregnancy in which there is incomplete closing of the spine around the spinal cord.

Deep Learning Fetal Ultrasound Video Model Match Human Observers in Biometric Measurements

1 code implementation27 May 2022 Szymon Płotka, Adam Klasa, Aneta Lisowska, Joanna Seliga-Siwecka, Michał Lipa, Tomasz Trzciński, Arkadiusz Sitek

We found that automated fetal biometric measurements obtained by FUVAI were comparable to the measurements performed by experienced sonographers The observed differences in measurement values were within the range of inter- and intra-observer variability.

BabyNet: Residual Transformer Module for Birth Weight Prediction on Fetal Ultrasound Video

1 code implementation19 May 2022 Szymon Płotka, Michal K. Grzeszczyk, Robert Brawura-Biskupski-Samaha, Paweł Gutaj, Michał Lipa, Tomasz Trzciński, Arkadiusz Sitek

Predicting fetal weight at birth is an important aspect of perinatal care, particularly in the context of antenatal management, which includes the planned timing and the mode of delivery.

Management

CXR-FL: Deep Learning-Based Chest X-ray Image Analysis Using Federated Learning

1 code implementation11 Apr 2022 Filip Ślazyk, Przemysław Jabłecki, Aneta Lisowska, Maciej Malawski, Szymon Płotka

Federated learning enables building a shared model from multicentre data while storing the training data locally for privacy.

Federated Learning

POTHER: Patch-Voted Deep Learning-Based Chest X-ray Bias Analysis for COVID-19 Detection

1 code implementation23 Jan 2022 Tomasz Szczepański, Arkadiusz Sitek, Tomasz Trzciński, Szymon Płotka

We show that our proposed method is more robust than previous attempts to counter confounding factors such as ECG leads in chest X-rays that often influence model classification decisions.

Explainable artificial intelligence

FetalNet: Multi-task Deep Learning Framework for Fetal Ultrasound Biometric Measurements

1 code implementation14 Jul 2021 Szymon Płotka, Tomasz Włodarczyk, Adam Klasa, Michał Lipa, Arkadiusz Sitek, Tomasz Trzciński

The main goal in fetal ultrasound scan video analysis is to find proper standard planes to measure the fetal head, abdomen and femur.

Convolutional Neural Networks in Orthodontics: a review

no code implementations18 Apr 2021 Szymon Płotka, Tomasz Włodarczyk, Ryszard Szczerba, Przemysław Rokita, Patrycja Bartkowska, Oskar Komisarek, Artur Matthews-Brzozowski, Tomasz Trzciński

Convolutional neural networks (CNNs) are used in many areas of computer vision, such as object tracking and recognition, security, military, and biomedical image analysis.

Object Tracking

Spontaneous preterm birth prediction using convolutional neural networks

no code implementations16 Aug 2020 Tomasz Włodarczyk, Szymon Płotka, Przemysław Rokita, Nicole Sochacki-Wójcicka, Jakub Wójcicki, Michał Lipa, Tomasz Trzciński

Based on the conducted results and model efficiency, we decided to extend U-Net by adding a parallel branch for classification task.

Estimation of preterm birth markers with U-Net segmentation network

no code implementations24 Aug 2019 Tomasz Włodarczyk, Szymon Płotka, Tomasz Trzciński, Przemysław Rokita, Nicole Sochacki-Wójcicka, Michał Lipa, Jakub Wójcicki

To achieve this goal, we propose to first use a deep neural network architecture for segmenting prenatal ultrasound images and then automatically extract two biophysical ultrasound markers, cervical length (CL) and anterior cervical angle (ACA), from the resulting images.

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