1 code implementation • 28 Mar 2024 • Ezequiel de la Rosa, Mauricio Reyes, Sook-Lei Liew, Alexandre Hutton, Roland Wiest, Johannes Kaesmacher, Uta Hanning, Arsany Hakim, Richard Zubal, Waldo Valenzuela, David Robben, Diana M. Sima, Vincenzo Anania, Arne Brys, James A. Meakin, Anne Mickan, Gabriel Broocks, Christian Heitkamp, Shengbo Gao, Kongming Liang, Ziji Zhang, Md Mahfuzur Rahman Siddiquee, Andriy Myronenko, Pooya Ashtari, Sabine Van Huffel, Hyun-su Jeong, Chi-ho Yoon, Chulhong Kim, Jiayu Huo, Sebastien Ourselin, Rachel Sparks, Albert Clèrigues, Arnau Oliver, Xavier Lladó, Liam Chalcroft, Ioannis Pappas, Jeroen Bertels, Ewout Heylen, Juliette Moreau, Nima Hatami, Carole Frindel, Abdul Qayyum, Moona Mazher, Domenec Puig, Shao-Chieh Lin, Chun-Jung Juan, Tianxi Hu, Lyndon Boone, Maged Goubran, Yi-Jui Liu, Susanne Wegener, Florian Kofler, Ivan Ezhov, Suprosanna Shit, Moritz R. Hernandez Petzsche, Bjoern Menze, Jan S. Kirschke, Benedikt Wiestler
We address this gap by presenting a novel ensemble algorithm derived from the 2022 Ischemic Stroke Lesion Segmentation (ISLES) challenge.
no code implementations • 8 Feb 2024 • Kelly Payette, Céline Steger, Roxane Licandro, Priscille de Dumast, Hongwei Bran Li, Matthew Barkovich, Liu Li, Maik Dannecker, Chen Chen, Cheng Ouyang, Niccolò McConnell, Alina Miron, Yongmin Li, Alena Uus, Irina Grigorescu, Paula Ramirez Gilliland, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Haoyu Wang, Ziyan Huang, Jin Ye, Mireia Alenyà, Valentin Comte, Oscar Camara, Jean-Baptiste Masson, Astrid Nilsson, Charlotte Godard, Moona Mazher, Abdul Qayyum, Yibo Gao, Hangqi Zhou, Shangqi Gao, Jia Fu, Guiming Dong, Guotai Wang, ZunHyan Rieu, HyeonSik Yang, Minwoo Lee, Szymon Płotka, Michal K. Grzeszczyk, Arkadiusz Sitek, Luisa Vargas Daza, Santiago Usma, Pablo Arbelaez, Wenying Lu, WenHao Zhang, Jing Liang, Romain Valabregue, Anand A. Joshi, Krishna N. Nayak, Richard M. Leahy, Luca Wilhelmi, Aline Dändliker, Hui Ji, Antonio G. Gennari, Anton Jakovčić, Melita Klaić, Ana Adžić, Pavel Marković, Gracia Grabarić, Gregor Kasprian, Gregor Dovjak, Milan Rados, Lana Vasung, Meritxell Bach Cuadra, Andras Jakab
The FeTA Challenge 2022 was able to successfully evaluate and advance generalizability of multi-class fetal brain tissue segmentation algorithms for MRI and it continues to benchmark new algorithms.
1 code implementation • IEEE/CVF Winter Conference on Applications of Computer Vision (WACV) 2023 • Jay Shah, Md Mahfuzur Rahman Siddiquee, Yi Su, Teresa Wu, Baoxin Li
However, these methods are subject to an inherent regression to the mean effect, which causes a systematic bias resulting in an overestimation of brain age in young subjects and underestimation in old subjects.
Ranked #1 on Ordinal Classification on OASIS+NACC+ICBM+ABIDE+IXI
2 code implementations • 18 Mar 2023 • Firas Al-Hindawi, Md Mahfuzur Rahman Siddiquee, Teresa Wu, Han Hu, Ying Sun
Cross-domain classification frameworks were developed to handle this data domain shift problem by utilizing unsupervised image-to-image translation models to translate an input image from the unlabeled domain to the labeled domain.
1 code implementation • 18 Feb 2023 • Md Mahfuzur Rahman Siddiquee, Jay Shah, Teresa Wu, Catherine Chong, Todd J. Schwedt, Gina Dumkrieger, Simona Nikolova, Baoxin Li
Harnessing the power of deep neural networks in the medical imaging domain is challenging due to the difficulties in acquiring large annotated datasets, especially for rare diseases, which involve high costs, time, and effort for annotation.
Ranked #1 on Anomaly Detection on ADNI
no code implementations • 9 Jan 2023 • Xiangyu Li, Gongning Luo, Kuanquan Wang, Hongyu Wang, Jun Liu, Xinjie Liang, Jie Jiang, Zhenghao Song, Chunyue Zheng, Haokai Chi, Mingwang Xu, Yingte He, Xinghua Ma, Jingwen Guo, Yifan Liu, Chuanpu Li, Zeli Chen, Md Mahfuzur Rahman Siddiquee, Andriy Myronenko, Antoine P. Sanner, Anirban Mukhopadhyay, Ahmed E. Othman, Xingyu Zhao, Weiping Liu, Jinhuang Zhang, Xiangyuan Ma, Qinghui Liu, Bradley J. MacIntosh, Wei Liang, Moona Mazher, Abdul Qayyum, Valeriia Abramova, Xavier Lladó, Shuo Li
It is intended to resolve the above-mentioned problems and promote the development of both intracranial hemorrhage segmentation and anisotropic data processing.
no code implementations • 18 Dec 2022 • Firas Al-Hindawi, Tejaswi Soori, Han Hu, Md Mahfuzur Rahman Siddiquee, Hyunsoo Yoon, Teresa Wu, Ying Sun
To deal with datasets from new domains a model needs to be trained from scratch.
1 code implementation • 22 Sep 2022 • Andriy Myronenko, Md Mahfuzur Rahman Siddiquee, Dong Yang, Yufan He, Daguang Xu
Head and neck tumor segmentation challenge (HECKTOR) 2022 offers a platform for researchers to compare their solutions to segmentation of tumors and lymph nodes from 3D CT and PET images.
no code implementations • 21 Sep 2022 • Md Mahfuzur Rahman Siddiquee, Dong Yang, Yufan He, Daguang Xu, Andriy Myronenko
Intracranial hemorrhage segmentation challenge (INSTANCE 2022) offers a platform for researchers to compare their solutions to segmentation of hemorrhage stroke regions from 3D CTs.
1 code implementation • 5 Sep 2022 • Md Mahfuzur Rahman Siddiquee, Jay Shah, Teresa Wu, Catherine Chong, Todd Schwedt, Baoxin Li
Therefore, this paper poses the research question of how to improve unsupervised anomaly detection by utilizing (1) an unannotated set of mixed images, in addition to (2) the set of healthy images as being used in the literature.
no code implementations • 20 Apr 2022 • Kelly Payette, Hongwei Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Specktor Fadida, Leo Joskowicz, Liao Weibin, Lv Yi, Li Xuesong, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, Kuanlun Liao, Yixuan Wu, Jintai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern Menze, Meritxell Bach Cuadra, Andras Jakab
Automatic segmentation of the developing fetal brain is a vital step in the quantitative analysis of prenatal neurodevelopment both in the research and clinical context.
no code implementations • CVPR 2022 • Cheng Peng, Andriy Myronenko, Ali Hatamizadeh, Vish Nath, Md Mahfuzur Rahman Siddiquee, Yufan He, Daguang Xu, Rama Chellappa, Dong Yang
Given the recent success of deep learning in medical image segmentation, Neural Architecture Search (NAS) has been introduced to find high-performance 3D segmentation network architectures.
no code implementations • 1 Nov 2021 • Md Mahfuzur Rahman Siddiquee, Andriy Myronenko
Another year of the multimodal brain tumor segmentation challenge (BraTS) 2021 provides an even larger dataset to facilitate collaboration and research of brain tumor segmentation methods, which are necessary for disease analysis and treatment planning.
no code implementations • 29 Sep 2021 • Md Mahfuzur Rahman Siddiquee, Teresa Wu, Baoxin Li
This paper poses the research question of how to improve anomaly detection by using an unannotated set of mixed images of both normal and anomalous samples (in addition to a set of normal images from healthy subjects).
12 code implementations • 11 Dec 2019 • Zongwei Zhou, Md Mahfuzur Rahman Siddiquee, Nima Tajbakhsh, Jianming Liang
The state-of-the-art models for medical image segmentation are variants of U-Net and fully convolutional networks (FCN).
Ranked #1 on Medical Image Segmentation on EM (IoU metric)
2 code implementations • 19 Aug 2019 • Zongwei Zhou, Vatsal Sodha, Md Mahfuzur Rahman Siddiquee, Ruibin Feng, Nima Tajbakhsh, Michael B. Gotway, Jianming Liang
More importantly, learning a model from scratch simply in 3D may not necessarily yield performance better than transfer learning from ImageNet in 2D, but our Models Genesis consistently top any 2D approaches including fine-tuning the models pre-trained from ImageNet as well as fine-tuning the 2D versions of our Models Genesis, confirming the importance of 3D anatomical information and significance of our Models Genesis for 3D medical imaging.
Ranked #1 on Pulmonary Embolism Detection on PE-CAD FPRED
1 code implementation • ICCV 2019 • Md Mahfuzur Rahman Siddiquee, Zongwei Zhou, Nima Tajbakhsh, Ruibin Feng, Michael B. Gotway, Yoshua Bengio, Jianming Liang
Qualitative and quantitative evaluations demonstrate that the proposed method outperforms the state of the art in multi-domain image-to-image translation and that it surpasses predominant weakly-supervised localization methods in both disease detection and localization.
33 code implementations • 18 Jul 2018 • Zongwei Zhou, Md Mahfuzur Rahman Siddiquee, Nima Tajbakhsh, Jianming Liang
Implementation of different kinds of Unet Models for Image Segmentation - Unet , RCNN-Unet, Attention Unet, RCNN-Attention Unet, Nested Unet
Ranked #1 on Video Polyp Segmentation on SUN-SEG-Easy