Search Results for author: Petru-Daniel Tudosiu

Found 16 papers, 9 papers with code

MULAN: A Multi Layer Annotated Dataset for Controllable Text-to-Image Generation

no code implementations3 Apr 2024 Petru-Daniel Tudosiu, Yongxin Yang, Shifeng Zhang, Fei Chen, Steven McDonagh, Gerasimos Lampouras, Ignacio Iacobacci, Sarah Parisot

To build MuLAn, we developed a training free pipeline which decomposes a monocular RGB image into a stack of RGBA layers comprising of background and isolated instances.

Prompt Engineering Text-to-Image Generation

Optimisation-Based Multi-Modal Semantic Image Editing

no code implementations28 Nov 2023 Bowen Li, Yongxin Yang, Steven McDonagh, Shifeng Zhang, Petru-Daniel Tudosiu, Sarah Parisot

Image editing affords increased control over the aesthetics and content of generated images.

InverseSR: 3D Brain MRI Super-Resolution Using a Latent Diffusion Model

1 code implementation23 Aug 2023 Jueqi Wang, Jacob Levman, Walter Hugo Lopez Pinaya, Petru-Daniel Tudosiu, M. Jorge Cardoso, Razvan Marinescu

To address this issue, we propose a novel approach that leverages a state-of-the-art 3D brain generative model, the latent diffusion model (LDM) trained on UK BioBank, to increase the resolution of clinical MRI scans.

Denoising MRI Reconstruction +1

Generative AI for Medical Imaging: extending the MONAI Framework

2 code implementations27 Jul 2023 Walter H. L. Pinaya, Mark S. Graham, Eric Kerfoot, Petru-Daniel Tudosiu, Jessica Dafflon, Virginia Fernandez, Pedro Sanchez, Julia Wolleb, Pedro F. da Costa, Ashay Patel, Hyungjin Chung, Can Zhao, Wei Peng, Zelong Liu, Xueyan Mei, Oeslle Lucena, Jong Chul Ye, Sotirios A. Tsaftaris, Prerna Dogra, Andrew Feng, Marc Modat, Parashkev Nachev, Sebastien Ourselin, M. Jorge Cardoso

We have implemented these models in a generalisable fashion, illustrating that their results can be extended to 2D or 3D scenarios, including medical images with different modalities (like CT, MRI, and X-Ray data) and from different anatomical areas.

Anomaly Detection Denoising +2

Denoising diffusion models for out-of-distribution detection

1 code implementation14 Nov 2022 Mark S. Graham, Walter H. L. Pinaya, Petru-Daniel Tudosiu, Parashkev Nachev, Sebastien Ourselin, M. Jorge Cardoso

We propose to use DDPMs to reconstruct an input that has been noised to a range of noise levels, and use the resulting multi-dimensional reconstruction error to classify out-of-distribution inputs.

Denoising Out-of-Distribution Detection

Brain Imaging Generation with Latent Diffusion Models

1 code implementation15 Sep 2022 Walter H. L. Pinaya, Petru-Daniel Tudosiu, Jessica Dafflon, Pedro F Da Costa, Virginia Fernandez, Parashkev Nachev, Sebastien Ourselin, M. Jorge Cardoso

In this study, we explore using Latent Diffusion Models to generate synthetic images from high-resolution 3D brain images.

Morphology-preserving Autoregressive 3D Generative Modelling of the Brain

1 code implementation7 Sep 2022 Petru-Daniel Tudosiu, Walter Hugo Lopez Pinaya, Mark S. Graham, Pedro Borges, Virginia Fernandez, Dai Yang, Jeremy Appleyard, Guido Novati, Disha Mehra, Mike Vella, Parashkev Nachev, Sebastien Ourselin, Jorge Cardoso

Still, the ability to produce high-resolution 3D volumetric imaging data with correct anatomical morphology has been hampered by data scarcity and algorithmic and computational limitations.

Anatomy Anomaly Detection

ICAM-reg: Interpretable Classification and Regression with Feature Attribution for Mapping Neurological Phenotypes in Individual Scans

1 code implementation3 Mar 2021 Cher Bass, Mariana da Silva, Carole Sudre, Logan Z. J. Williams, Petru-Daniel Tudosiu, Fidel Alfaro-Almagro, Sean P. Fitzgibbon, Matthew F. Glasser, Stephen M. Smith, Emma C. Robinson

An important goal of medical imaging is to be able to precisely detect patterns of disease specific to individual scans; however, this is challenged in brain imaging by the degree of heterogeneity of shape and appearance.

Disentanglement Image Registration +1

Unsupervised Brain Anomaly Detection and Segmentation with Transformers

no code implementations23 Feb 2021 Walter Hugo Lopez Pinaya, Petru-Daniel Tudosiu, Robert Gray, Geraint Rees, Parashkev Nachev, Sebastien Ourselin, M. Jorge Cardoso

Pathological brain appearances may be so heterogeneous as to be intelligible only as anomalies, defined by their deviation from normality rather than any specific pathological characteristic.

Unsupervised Anomaly Detection

Hierarchical brain parcellation with uncertainty

no code implementations16 Sep 2020 Mark S. Graham, Carole H. Sudre, Thomas Varsavsky, Petru-Daniel Tudosiu, Parashkev Nachev, Sebastien Ourselin, M. Jorge Cardoso

We introduce a hierarchically-aware brain parcellation method that works by predicting the decisions at each branch in the label tree.

ICAM: Interpretable Classification via Disentangled Representations and Feature Attribution Mapping

1 code implementation NeurIPS 2020 Cher Bass, Mariana da Silva, Carole Sudre, Petru-Daniel Tudosiu, Stephen M. Smith, Emma C. Robinson

Feature attribution (FA), or the assignment of class-relevance to different locations in an image, is important for many classification problems but is particularly crucial within the neuroscience domain, where accurate mechanistic models of behaviours, or disease, require knowledge of all features discriminative of a trait.

Classification General Classification +3

Neuromorphologicaly-preserving Volumetric data encoding using VQ-VAE

no code implementations MIDL 2019 Petru-Daniel Tudosiu, Thomas Varsavsky, Richard Shaw, Mark Graham, Parashkev Nachev, Sebastien Ourselin, Carole H. Sudre, M. Jorge Cardoso

The increasing efficiency and compactness of deep learning architectures, together with hardware improvements, have enabled the complex and high-dimensional modelling of medical volumetric data at higher resolutions.

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