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Found 32 papers, 13 papers with code
3D UX-Net: A Large Kernel Volumetric ConvNet Modernizing Hierarchical Transformer for Medical Image Segmentation
Hierarchical transformers (e. g., Swin Transformers) reintroduced several ConvNet priors and further enhanced the practical viability of adapting volumetric segmentation in 3D medical datasets.
UNesT: Local Spatial Representation Learning with Hierarchical Transformer for Efficient Medical Segmentation
Transformer-based models, capable of learning better global dependencies, have recently demonstrated exceptional representation learning capabilities in computer vision and medical image analysis.
Enhancing Hierarchical Transformers for Whole Brain Segmentation with Intracranial Measurements Integration
Subsequently, the model is finetuned with 45 T1w 3D volumes from Open Access Series Imaging Studies (OASIS) where both 133 whole brain classes and TICV/PFV labels are available.
ModDrop++: A Dynamic Filter Network with Intra-subject Co-training for Multiple Sclerosis Lesion Segmentation with Missing Modalities
Previously, a training strategy termed Modality Dropout (ModDrop) has been applied to MS lesion segmentation to achieve the state-of-the-art performance with missing modality.
Scaling Up 3D Kernels with Bayesian Frequency Re-parameterization for Medical Image Segmentation
We hypothesize that convolution with LK sizes is limited to maintain an optimal convergence for locality learning.
DeformUX-Net: Exploring a 3D Foundation Backbone for Medical Image Segmentation with Depthwise Deformable Convolution
We hypothesize that deformable convolution can be an exploratory alternative to combine all advantages from the previous operators, providing long-range dependency, adaptive spatial aggregation and computational efficiency as a foundation backbone.
Reducing Positional Variance in Cross-sectional Abdominal CT Slices with Deep Conditional Generative Models
External experiments on 20 subjects from the Baltimore Longitudinal Study of Aging (BLSA) dataset that contains longitudinal single abdominal slices validate that our method can harmonize the slice positional variance in terms of muscle and visceral fat area.
Deep conditional generative models for longitudinal single-slice abdominal computed tomography harmonization
We further evaluate our method's capability to harmonize longitudinal positional variation on 1033 subjects from the Baltimore Longitudinal Study of Aging (BLSA) dataset, which contains longitudinal single abdominal slices, and confirmed that our method can harmonize the slice positional variance in terms of visceral fat area.
3D-MIR: A Benchmark and Empirical Study on 3D Medical Image Retrieval in Radiology
The increasing use of medical imaging in healthcare settings presents a significant challenge due to the increasing workload for radiologists, yet it also offers opportunity for enhancing healthcare outcomes if effectively leveraged.
Single Slice Thigh CT Muscle Group Segmentation with Domain Adaptation and Self-Training
The proposed pipeline is effective and robust in extracting muscle groups on 2D single slice CT thigh images. The container is available for public use at https://github. com/MASILab/DA_CT_muscle_seg
Longitudinal Multimodal Transformer Integrating Imaging and Latent Clinical Signatures From Routine EHRs for Pulmonary Nodule Classification
In this work, we propose a transformer-based multimodal strategy to integrate repeat imaging with longitudinal clinical signatures from routinely collected EHRs for SPN classification.
RAP-Net: Coarse-to-Fine Multi-Organ Segmentation with Single Random Anatomical Prior
We combine the anatomical prior with corresponding extracted patches to preserve the anatomical locations and boundary information for performing high-resolution segmentation across all organs in a single model.
Adaptive Contrastive Learning with Dynamic Correlation for Multi-Phase Organ Segmentation
We evaluate our proposed approach on multi-organ segmentation with both non-contrast CT (NCCT) datasets and the MICCAI 2015 BTCV Challenge contrast-enhance CT (CECT) datasets.
Semi-Supervised Multi-Organ Segmentation through Quality Assurance Supervision
The contributions of the proposed method are threefold: We show that (1) the QA scores can be used as a loss function to perform semi-supervised learning for unlabeled data, (2) the well trained discriminator is learnt by QA score rather than traditional true/false, and (3) the performance of multi-organ segmentation on unlabeled datasets can be fine-tuned with more robust and higher accuracy than the original baseline method.
Contrast Phase Classification with a Generative Adversarial Network
Dynamic contrast enhanced computed tomography (CT) is an imaging technique that provides critical information on the relationship of vascular structure and dynamics in the context of underlying anatomy.
Validation and Optimization of Multi-Organ Segmentation on Clinical Imaging Archives
A 2015 MICCAI challenge spurred substantial innovation in multi-organ abdominal CT segmentation with both traditional and deep learning methods.
Outlier Guided Optimization of Abdominal Segmentation
We built on a pre-trained 3D U-Net model for abdominal multi-organ segmentation and augmented the dataset either with outlier data (e. g., exemplars for which the baseline algorithm failed) or inliers (e. g., exemplars for which the baseline algorithm worked).
Multi-Contrast Computed Tomography Healthy Kidney Atlas
However, there is no abdominal and retroperitoneal organs atlas framework for multi-contrast CT.
Semantic-Aware Contrastive Learning for Multi-object Medical Image Segmentation
Medical image segmentation, or computing voxelwise semantic masks, is a fundamental yet challenging task to compute a voxel-level semantic mask.
Lung Cancer Risk Estimation with Incomplete Data: A Joint Missing Imputation Perspective
To our knowledge, it is the first generative adversarial model that addresses multi-modal missing imputation by modeling the joint distribution of image and non-image data.
Random Multi-Channel Image Synthesis for Multiplexed Immunofluorescence Imaging
Our contribution is three-fold: (1) a single deep network framework is proposed to tackle missing stain in MxIF; (2) the proposed 'N-to-N' strategy reduces theoretical four years of computational time to 20 hours when covering all possible missing stains scenarios, with up to five missing stains (e. g., '(N-1)-to-1', '(N-2)-to-2'); and (3) this work is the first comprehensive experimental study of investigating cross-stain synthesis in MxIF.
Characterizing Renal Structures with 3D Block Aggregate Transformers
Efficiently quantifying renal structures can provide distinct spatial context and facilitate biomarker discovery for kidney morphology.
Pseudo-Label Guided Multi-Contrast Generalization for Non-Contrast Organ-Aware Segmentation
In this paper, we propose a novel unsupervised approach that leverages pairwise contrast-enhanced CT (CECT) context to compute non-contrast segmentation without ground-truth label.
Longitudinal Variability Analysis on Low-dose Abdominal CT with Deep Learning-based Segmentation
Metabolic health is increasingly implicated as a risk factor across conditions from cardiology to neurology, and efficiency assessment of body composition is critical to quantitatively characterizing these relationships.
Region-based Contrastive Pretraining for Medical Image Retrieval with Anatomic Query
We introduce a novel Region-based contrastive pretraining for Medical Image Retrieval (RegionMIR) that demonstrates the feasibility of medical image retrieval with similar anatomical regions.
Multi-Contrast Computed Tomography Atlas of Healthy Pancreas
Briefly, DEEDs affine and non-rigid registration are performed to transfer patient abdominal volumes to a fixed high-resolution atlas template.
Digital Modeling on Large Kernel Metamaterial Neural Network
However, the digital design of the metamaterial neural network (MNN) is fundamentally limited by its physical limitations, such as precision, noise, and bandwidth during fabrication.
Inter-vendor harmonization of Computed Tomography (CT) reconstruction kernels using unpaired image translation
In this study, we adopt an unpaired image translation approach to investigate harmonization between and across reconstruction kernels from different manufacturers by constructing a multipath cycle generative adversarial network (GAN).
Predicting Age from White Matter Diffusivity with Residual Learning
We find that the ResNet model captures subtler, non-macrostructural features for brain age prediction.
Super-Resolution Multi-Contrast Unbiased Eye Atlases With Deep Probabilistic Refinement
These variations limit the feasibility and robustness of generalizing population-wise features of eye organs to an unbiased spatial reference.
Nucleus subtype classification using inter-modality learning
In this paper, we propose to use inter-modality learning to label previously un-labelable cell types on virtual H&E.
Foundation Models for Biomedical Image Segmentation: A Survey
This transformative technology, originally developed for general-purpose computer vision, has found rapid application in medical image processing.
