Search Results for author: Nassir Navab

Found 367 papers, 117 papers with code

Inherent Brain Segmentation Quality Control from Fully ConvNet Monte Carlo Sampling

no code implementations19 Apr 2018 Abhijit Guha Roy, Sailesh Conjeti, Nassir Navab, Christian Wachinger

We introduce inherent measures for effective quality control of brain segmentation based on a Bayesian fully convolutional neural network, using model uncertainty.

Brain Segmentation Segmentation +1

Generalizing multistain immunohistochemistry tissue segmentation using one-shot color deconvolution deep neural networks

no code implementations17 May 2018 Amal Lahiani, Jacob Gildenblat, Irina Klaman, Nassir Navab, Eldad Klaiman

A key challenge in cancer immunotherapy biomarker research is quantification of pattern changes in microscopic whole slide images of tumor biopsies.

whole slide images

Situation Assessment for Planning Lane Changes: Combining Recurrent Models and Prediction

no code implementations17 May 2018 Oliver Scheel, Loren Schwarz, Nassir Navab, Federico Tombari

One of the greatest challenges towards fully autonomous cars is the understanding of complex and dynamic scenes.

When Regression Meets Manifold Learning for Object Recognition and Pose Estimation

no code implementations16 May 2018 Mai Bui, Sergey Zakharov, Shadi Albarqouni, Slobodan Ilic, Nassir Navab

By combining the strengths of manifold learning using triplet loss and pose regression, we could either estimate the pose directly reducing the complexity compared to NN search, or use learned descriptor for the NN descriptor matching.

Multi-Task Learning Object Recognition +4

Multi Layered-Parallel Graph Convolutional Network (ML-PGCN) for Disease Prediction

no code implementations28 Apr 2018 Anees Kazi, Shadi Albarqouni, Karsten Kortuem, Nassir Navab

Structural data from Electronic Health Records as complementary information to imaging data for disease prediction.

Disease Prediction

Analyzing and Exploiting NARX Recurrent Neural Networks for Long-Term Dependencies

no code implementations ICLR 2018 Robert DiPietro, Christian Rupprecht, Nassir Navab, Gregory D. Hager

Recurrent neural networks (RNNs) have achieved state-of-the-art performance on many diverse tasks, from machine translation to surgical activity recognition, yet training RNNs to capture long-term dependencies remains difficult.

Activity Recognition Machine Translation +1

Domain and Geometry Agnostic CNNs for Left Atrium Segmentation in 3D Ultrasound

no code implementations20 Apr 2018 Markus A. Degel, Nassir Navab, Shadi Albarqouni

Segmentation of the left atrium and deriving its size can help to predict and detect various cardiovascular conditions.

Domain Adaptation Left Atrium Segmentation +1

MelanoGANs: High Resolution Skin Lesion Synthesis with GANs

no code implementations12 Apr 2018 Christoph Baur, Shadi Albarqouni, Nassir Navab

Generative Adversarial Networks (GANs) have been successfully used to synthesize realistically looking images of faces, scenery and even medical images.

Image Generation Lesion Classification +2

Exploiting Partial Structural Symmetry For Patient-Specific Image Augmentation in Trauma Interventions

no code implementations9 Apr 2018 Javad Fotouhi, Mathias Unberath, Giacomo Taylor, Arash Ghaani Farashahi, Bastian Bier, Russell H. Taylor, Greg M. Osgood, M. D., Mehran Armand, Nassir Navab

The main challenge is to automatically estimate the desired plane of symmetry within the patient's pre-operative CT. We propose to estimate this plane using a non-linear optimization strategy, by minimizing Tukey's biweight robust estimator, relying on the partial symmetry of the anatomy.

Anatomy Image Augmentation

Webly Supervised Learning for Skin Lesion Classification

no code implementations31 Mar 2018 Fernando Navarro, Sailesh Conjeti, Federico Tombari, Nassir Navab

Within medical imaging, manual curation of sufficient well-labeled samples is cost, time and scale-prohibitive.

Classification General Classification +4

Multi-modal Disease Classification in Incomplete Datasets Using Geometric Matrix Completion

no code implementations30 Mar 2018 Gerome Vivar, Andreas Zwergal, Nassir Navab, Seyed-Ahmad Ahmadi

In this work, we follow up on the idea of modeling multi-modal disease classification as a matrix completion problem, with simultaneous classification and non-linear imputation of features.

Classification General Classification +2

Guide Me: Interacting with Deep Networks

no code implementations CVPR 2018 Christian Rupprecht, Iro Laina, Nassir Navab, Gregory D. Hager, Federico Tombari

Interaction and collaboration between humans and intelligent machines has become increasingly important as machine learning methods move into real-world applications that involve end users.

Image Captioning Image Generation

Generalizability vs. Robustness: Adversarial Examples for Medical Imaging

no code implementations23 Mar 2018 Magdalini Paschali, Sailesh Conjeti, Fernando Navarro, Nassir Navab

In this paper, for the first time, we propose an evaluation method for deep learning models that assesses the performance of a model not only in an unseen test scenario, but also in extreme cases of noise, outliers and ambiguous input data.

Brain Segmentation General Classification +2

A Minimalist Approach to Type-Agnostic Detection of Quadrics in Point Clouds

no code implementations CVPR 2018 Tolga Birdal, Benjamin Busam, Nassir Navab, Slobodan Ilic, Peter Sturm

As opposed to state-of-the-art, where a tailored algorithm treats each primitive type separately, we propose to encapsulate all types in a single robust detection procedure.

Scene Understanding

Fast 5DOF Needle Tracking in iOCT

no code implementations18 Feb 2018 Jakob Weiss, Nicola Rieke, Mohammad Ali Nasseri, Mathias Maier, Abouzar Eslami, Nassir Navab

We propose to build on its desirable qualities and present a method for tracking the orientation and location of a surgical needle.

Multi-layer Visualization for Medical Mixed Reality

no code implementations26 Sep 2017 Séverine Habert, Ma Meng, Pascal Fallavollita, Nassir Navab

In this paper and to our knowledge, we propose a multi-layer visualization in Medical Mixed Reality solution which subtly improves a surgeon's visualization by making transparent the occluding objects.

Mixed Reality

6D Object Pose Estimation with Depth Images: A Seamless Approach for Robotic Interaction and Augmented Reality

no code implementations5 Sep 2017 David Joseph Tan, Nassir Navab, Federico Tombari

To determine the 3D orientation and 3D location of objects in the surroundings of a camera mounted on a robot or mobile device, we developed two powerful algorithms in object detection and temporal tracking that are combined seamlessly for robotic perception and interaction as well as Augmented Reality (AR).

6D Pose Estimation using RGB Object +2

The TUM LapChole dataset for the M2CAI 2016 workflow challenge

no code implementations28 Oct 2016 Ralf Stauder, Daniel Ostler, Michael Kranzfelder, Sebastian Koller, Hubertus Feußner, Nassir Navab

In this technical report we present our collected dataset of laparoscopic cholecystectomies (LapChole).

Camera Pose Filtering with Local Regression Geodesics on the Riemannian Manifold of Dual Quaternions

no code implementations24 Apr 2017 Benjamin Busam, Tolga Birdal, Nassir Navab

Time-varying, smooth trajectory estimation is of great interest to the vision community for accurate and well behaving 3D systems.

Pose Tracking regression +1

Long Short-Term Memory Kalman Filters:Recurrent Neural Estimators for Pose Regularization

no code implementations6 Aug 2017 Huseyin Coskun, Felix Achilles, Robert DiPietro, Nassir Navab, Federico Tombari

One-shot pose estimation for tasks such as body joint localization, camera pose estimation, and object tracking are generally noisy, and temporal filters have been extensively used for regularization.

Object Tracking Pose Estimation

Learning-based Surgical Workflow Detection from Intra-Operative Signals

no code implementations2 Jun 2017 Ralf Stauder, Ergün Kayis, Nassir Navab

A modern operating room (OR) provides a plethora of advanced medical devices.

X-ray In-Depth Decomposition: Revealing The Latent Structures

no code implementations19 Dec 2016 Shadi Albarqouni, Javad Fotouhi, Nassir Navab

X-ray radiography is the most readily available imaging modality and has a broad range of applications that spans from diagnosis to intra-operative guidance in cardiac, orthopedics, and trauma procedures.

Anatomy

Learning Robust Hash Codes for Multiple Instance Image Retrieval

no code implementations16 Mar 2017 Sailesh Conjeti, Magdalini Paschali, Amin Katouzian, Nassir Navab

In this paper, for the first time, we introduce a multiple instance (MI) deep hashing technique for learning discriminative hash codes with weak bag-level supervision suited for large-scale retrieval.

Deep Hashing Image Retrieval +1

Cross-Modal Manifold Learning for Cross-modal Retrieval

no code implementations19 Dec 2016 Sailesh Conjeti, Anees Kazi, Nassir Navab, Amin Katouzian

This paper presents a new scalable algorithm for cross-modal similarity preserving retrieval in a learnt manifold space.

Cross-Modal Retrieval Retrieval

Deep Residual Hashing

no code implementations16 Dec 2016 Sailesh Conjeti, Abhijit Guha Roy, Amin Katouzian, Nassir Navab

Hashing aims at generating highly compact similarity preserving code words which are well suited for large-scale image retrieval tasks.

Binarization Image Retrieval +3

A Deep Metric for Multimodal Registration

no code implementations17 Sep 2016 Martin Simonovsky, Benjamín Gutiérrez-Becker, Diana Mateus, Nassir Navab, Nikos Komodakis

Multimodal registration is a challenging problem in medical imaging due the high variability of tissue appearance under different imaging modalities.

Mitosis Detection in Intestinal Crypt Images with Hough Forest and Conditional Random Fields

no code implementations26 Aug 2016 Gerda Bortsova, Michael Sterr, Lichao Wang, Fausto Milletari, Nassir Navab, Anika Böttcher, Heiko Lickert, Fabian Theis, Tingying Peng

A statistical analysis of these measurements requires annotation of mitosis events, which is currently a tedious and time-consuming task that has to be performed manually.

Mitosis Detection

An Octree-Based Approach towards Efficient Variational Range Data Fusion

no code implementations26 Aug 2016 Wadim Kehl, Tobias Holl, Federico Tombari, Slobodan Ilic, Nassir Navab

Volume-based reconstruction is usually expensive both in terms of memory consumption and runtime.

Deep Active Contours

no code implementations18 Jul 2016 Christian Rupprecht, Elizabeth Huaroc, Maximilian Baust, Nassir Navab

We propose a method for interactive boundary extraction which combines a deep, patch-based representation with an active contour framework.

Interactive Segmentation

A Taxonomy and Library for Visualizing Learned Features in Convolutional Neural Networks

no code implementations24 Jun 2016 Felix Grün, Christian Rupprecht, Nassir Navab, Federico Tombari

Over the last decade, Convolutional Neural Networks (CNN) saw a tremendous surge in performance.

Semi-Automatic Segmentation of Autosomal Dominant Polycystic Kidneys using Random Forests

no code implementations23 Oct 2015 Kanishka Sharma, Loic Peter, Christian Rupprecht, Anna Caroli, Lichao Wang, Andrea Remuzzi, Maximilian Baust, Nassir Navab

This paper presents a method for 3D segmentation of kidneys from patients with autosomal dominant polycystic kidney disease (ADPKD) and severe renal insufficiency, using computed tomography (CT) data.

Computed Tomography (CT) Segmentation

Augmented Reality-based Feedback for Technician-in-the-loop C-arm Repositioning

no code implementations22 Jun 2018 Mathias Unberath, Javad Fotouhi, Jonas Hajek, Andreas Maier, Greg Osgood, Russell Taylor, Mehran Armand, Nassir Navab

For C-arm repositioning to a particular target view, the recorded C-arm pose is restored as a virtual object and visualized in an AR environment, serving as a perceptual reference for the technician.

Anatomy

SynNet: Structure-Preserving Fully Convolutional Networks for Medical Image Synthesis

no code implementations29 Jun 2018 Deepa Gunashekar, Sailesh Conjeti, Abhijit Guha Roy, Nassir Navab, Kuangyu Shi

Cross modal image syntheses is gaining significant interests for its ability to estimate target images of a different modality from a given set of source images, like estimating MR to MR, MR to CT, CT to PET etc, without the need for an actual acquisition. Though they show potential for applications in radiation therapy planning, image super resolution, atlas construction, image segmentation etc. The synthesis results are not as accurate as the actual acquisition. In this paper, we address the problem of multi modal image synthesis by proposing a fully convolutional deep learning architecture called the SynNet. We extend the proposed architecture for various input output configurations.

Image Generation Image Segmentation +2

Competition vs. Concatenation in Skip Connections of Fully Convolutional Networks

no code implementations20 Jul 2018 Santiago Estrada, Sailesh Conjeti, Muneer Ahmad, Nassir Navab, Martin Reuter

Increased information sharing through short and long-range skip connections between layers in fully convolutional networks have demonstrated significant improvement in performance for semantic segmentation.

Segmentation Semantic Segmentation

Peeking Behind Objects: Layered Depth Prediction from a Single Image

no code implementations23 Jul 2018 Helisa Dhamo, Keisuke Tateno, Iro Laina, Nassir Navab, Federico Tombari

While conventional depth estimation can infer the geometry of a scene from a single RGB image, it fails to estimate scene regions that are occluded by foreground objects.

Depth Estimation Depth Prediction

Generating Highly Realistic Images of Skin Lesions with GANs

no code implementations5 Sep 2018 Christoph Baur, Shadi Albarqouni, Nassir Navab

As many other machine learning driven medical image analysis tasks, skin image analysis suffers from a chronic lack of labeled data and skewed class distributions, which poses problems for the training of robust and well-generalizing models.

BIG-bench Machine Learning Lesion Segmentation +1

GANs for Medical Image Analysis

no code implementations13 Sep 2018 Salome Kazeminia, Christoph Baur, Arjan Kuijper, Bram van Ginneken, Nassir Navab, Shadi Albarqouni, Anirban Mukhopadhyay

Generative Adversarial Networks (GANs) and their extensions have carved open many exciting ways to tackle well known and challenging medical image analysis problems such as medical image de-noising, reconstruction, segmentation, data simulation, detection or classification.

General Classification

Virtualization of tissue staining in digital pathology using an unsupervised deep learning approach

no code implementations15 Oct 2018 Amal Lahiani, Jacob Gildenblat, Irina Klaman, Shadi Albarqouni, Nassir Navab, Eldad Klaiman

Histopathological evaluation of tissue samples is a key practice in patient diagnosis and drug development, especially in oncology.

InfiNet: Fully Convolutional Networks for Infant Brain MRI Segmentation

no code implementations11 Oct 2018 Shubham Kumar, Sailesh Conjeti, Abhijit Guha Roy, Christian Wachinger, Nassir Navab

We present a novel, parameter-efficient and practical fully convolutional neural network architecture, termed InfiNet, aimed at voxel-wise semantic segmentation of infant brain MRI images at iso-intense stage, which can be easily extended for other segmentation tasks involving multi-modalities.

Decoder Infant Brain Mri Segmentation +3

Adversarial Semantic Scene Completion from a Single Depth Image

no code implementations25 Oct 2018 Yida Wang, David Joseph Tan, Nassir Navab, Federico Tombari

We propose a method to reconstruct, complete and semantically label a 3D scene from a single input depth image.

Dealing with Ambiguity in Robotic Grasping via Multiple Predictions

no code implementations2 Nov 2018 Ghazal Ghazaei, Iro Laina, Christian Rupprecht, Federico Tombari, Nassir Navab, Kianoush Nazarpour

Further, we reformulate the problem of robotic grasping by replacing conventional grasp rectangles with grasp belief maps, which hold more precise location information than a rectangle and account for the uncertainty inherent to the task.

Robotic Grasping

Redefining Ultrasound Compounding: Computational Sonography

no code implementations5 Nov 2018 Rüdiger Göbl, Diana Mateus, Christoph Hennersperger, Maximilian Baust, Nassir Navab

By providing a novel paradigm for the acquisition and reconstruction of tracked freehand 3D ultrasound, this work presents the concept of Computational Sonography (CS) to model the directionality of ultrasound information.

Explaining the Ambiguity of Object Detection and 6D Pose From Visual Data

no code implementations ICCV 2019 Fabian Manhardt, Diego Martin Arroyo, Christian Rupprecht, Benjamin Busam, Tolga Birdal, Nassir Navab, Federico Tombari

For each object instance we predict multiple pose and class outcomes to estimate the specific pose distribution generated by symmetries and repetitive textures.

3D Object Detection Object +3

Distortion-Aware Convolutional Filters for Dense Prediction in Panoramic Images

no code implementations ECCV 2018 Keisuke Tateno, Nassir Navab, Federico Tombari

There is a high demand of 3D data for 360° panoramic images and videos, pushed by the growing availability on the market of specialized hardware for both capturing (e. g., omnidirectional cameras) as well as visualizing in 3D (e. g., head mounted displays) panoramic images and videos.

Depth Estimation Semantic Segmentation +1

Self-Attention Equipped Graph Convolutions for Disease Prediction

no code implementations24 Dec 2018 Anees Kazi, S. Arvind krishna, Shayan Shekarforoush, Karsten Kortuem, Shadi Albarqouni, Nassir Navab

A model capable of leveraging the individuality of each multi-modal data is required for better disease prediction.

Disease Prediction

Generic Primitive Detection in Point Clouds Using Novel Minimal Quadric Fits

no code implementations4 Jan 2019 Tolga Birdal, Benjamin Busam, Nassir Navab, Slobodan Ilic, Peter Sturm

Based upon the idea of aligning the quadric gradients with the surface normals, our first formulation is exact and requires as low as four oriented points.

Data Augmentation with Manifold Exploring Geometric Transformations for Increased Performance and Robustness

no code implementations14 Jan 2019 Magdalini Paschali, Walter Simson, Abhijit Guha Roy, Muhammad Ferjad Naeem, Rüdiger Göbl, Christian Wachinger, Nassir Navab

Compared with traditional augmentation methods, and with images synthesized by Generative Adversarial Networks our method not only achieves state-of-the-art performance but also significantly improves the network's robustness.

Data Augmentation General Classification +2

Human Shape and Pose Tracking Using Keyframes

no code implementations CVPR 2014 Chun-Hao Huang, Edmond Boyer, Nassir Navab, Slobodan Ilic

In contrast to many existing approaches that rely on a single reference model, multiple templates represent a larger variability of human poses.

Pose Tracking

Total Variation Regularization of Shape Signals

no code implementations CVPR 2015 Maximilian Baust, Laurent Demaret, Martin Storath, Nassir Navab, Andreas Weinmann

This paper introduces the concept of shape signals, i. e., series of shapes which have a natural temporal or spatial ordering, as well as a variational formulation for the regularization of these signals.

Toward User-Specific Tracking by Detection of Human Shapes in Multi-Cameras

no code implementations CVPR 2015 Chun-Hao Huang, Edmond Boyer, Bibiana do Canto Angonese, Nassir Navab, Slobodan Ilic

It usually comprises an association step, that finds correspondences between the model and the input data, and a deformation step, that fits the model to the observations given correspondences.

Temporal Sequences

Volumetric 3D Tracking by Detection

no code implementations CVPR 2016 Chun-Hao Huang, Benjamin Allain, Jean-Sebastien Franco, Nassir Navab, Slobodan Ilic, Edmond Boyer

In this paper, we propose a new framework for 3D tracking by detection based on fully volumetric representations.

Computational Efficiency

Weakly-Supervised Structured Output Learning With Flexible and Latent Graphs Using High-Order Loss Functions

no code implementations ICCV 2015 Gustavo Carneiro, Tingying Peng, Christine Bayer, Nassir Navab

We introduce two new structured output models that use a latent graph, which is flexible in terms of the number of nodes and structure, where the training process minimises a high-order loss function using a weakly annotated training set.

A Versatile Learning-Based 3D Temporal Tracker: Scalable, Robust, Online

no code implementations ICCV 2015 David Joseph Tan, Federico Tombari, Slobodan Ilic, Nassir Navab

This paper proposes a temporal tracking algorithm based on Random Forest that uses depth images to estimate and track the 3D pose of a rigid object in real-time.

Occlusion Handling

Long Short-Term Memory Kalman Filters: Recurrent Neural Estimators for Pose Regularization

no code implementations ICCV 2017 Huseyin Coskun, Felix Achilles, Robert DiPietro, Nassir Navab, Federico Tombari

One-shot pose estimation for tasks such as body joint localization, camera pose estimation, and object tracking are generally noisy, and temporal filters have been extensively used for regularization.

Object Tracking Pose Estimation

Precise Proximal Femur Fracture Classification for Interactive Training and Surgical Planning

no code implementations4 Feb 2019 Amelia Jiménez-Sánchez, Anees Kazi, Shadi Albarqouni, Chlodwig Kirchhoff, Peter Biberthaler, Nassir Navab, Sonja Kirchhoff, Diana Mateus

We demonstrate the feasibility of a fully automatic computer-aided diagnosis (CAD) tool, based on deep learning, that localizes and classifies proximal femur fractures on X-ray images according to the AO classification.

Classification General Classification +3

Attention-based Lane Change Prediction

no code implementations4 Mar 2019 Oliver Scheel, Naveen Shankar Nagaraja, Loren Schwarz, Nassir Navab, Federico Tombari

Lane change prediction of surrounding vehicles is a key building block of path planning.

Adversarial Networks for Camera Pose Regression and Refinement

no code implementations15 Mar 2019 Mai Bui, Christoph Baur, Nassir Navab, Slobodan Ilic, Shadi Albarqouni

Despite recent advances on the topic of direct camera pose regression using neural networks, accurately estimating the camera pose of a single RGB image still remains a challenging task.

Pose Estimation regression

End-to-End Learning-Based Ultrasound Reconstruction

no code implementations9 Apr 2019 Walter Simson, Rüdiger Göbl, Magdalini Paschali, Markus Krönke, Klemens Scheidhauer, Wolfgang Weber, Nassir Navab

The proposed method displays both promising image reconstruction quality and acquisition frequency when integrated for live ultrasound scanning.

Image Reconstruction

Weakly-Supervised White and Grey Matter Segmentation in 3D Brain Ultrasound

no code implementations10 Apr 2019 Beatrice Demiray, Julia Rackerseder, Stevica Bozhinoski, Nassir Navab

We implement label transfer from MRI to US, which is prone to a residual but inevitable registration error.

Transfer Learning

Collaboration Analysis Using Deep Learning

no code implementations17 Apr 2019 Zhang Guo, Kevin Yu, Rebecca Pearlman, Nassir Navab, Roghayeh Barmaki

The analysis of the collaborative learning process is one of the growing fields of education research, which has many different analytic solutions.

Anatomy Object Recognition

Fully Automatic Segmentation of 3D Brain Ultrasound: Learning from Coarse Annotations

no code implementations18 Apr 2019 Julia Rackerseder, Rüdiger Göbl, Nassir Navab, Christoph Hennersperger

Trained on the dataset alone, we report a Dice and Jaccard coefficient of $0. 45 \pm 0. 09$ and $0. 30 \pm 0. 07$ respectively, as well as an average distance of $0. 78 \pm 0. 36~mm$.

Segmentation

Learning Interpretable Disentangled Representations using Adversarial VAEs

no code implementations17 Apr 2019 Mhd Hasan Sarhan, Abouzar Eslami, Nassir Navab, Shadi Albarqouni

Learning Interpretable representation in medical applications is becoming essential for adopting data-driven models into clinical practice.

Clustering Disentanglement +1

Multi-scale Microaneurysms Segmentation Using Embedding Triplet Loss

no code implementations18 Apr 2019 Mhd Hasan Sarhan, Shadi Albarqouni, Mehmet Yigitsoy, Nassir Navab, Abouzar Eslami

To enhance the discriminative power of the classification model, we incorporate triplet embedding loss with a selective sampling routine.

Classification Diabetic Retinopathy Detection +2

Multi-modal Graph Fusion for Inductive Disease Classification in Incomplete Datasets

no code implementations8 May 2019 Gerome Vivar, Hendrik Burwinkel, Anees Kazi, Andreas Zwergal, Nassir Navab, Seyed-Ahmad Ahmadi

Recently, several works proposed geometric deep learning approaches to solve disease classification, by modeling patients as nodes in a graph, along with graph signal processing of multi-modal features.

Classification Decision Making +1

Adaptive Image-Feature Learning for Disease Classification Using Inductive Graph Networks

no code implementations8 May 2019 Hendrik Burwinkel, Anees Kazi, Gerome Vivar, Shadi Albarqouni, Guillaume Zahnd, Nassir Navab, Seyed-Ahmad Ahmadi

We propose a new network architecture that exploits an inductive end-to-end learning approach for disease classification, where filters from both the CNN and the graph are trained jointly.

Classification General Classification

Learning Interpretable Features via Adversarially Robust Optimization

no code implementations9 May 2019 Ashkan Khakzar, Shadi Albarqouni, Nassir Navab

In this work, we propose a method for improving the feature interpretability of neural network classifiers.

Decision Making

BrainTorrent: A Peer-to-Peer Environment for Decentralized Federated Learning

no code implementations16 May 2019 Abhijit Guha Roy, Shayan Siddiqui, Sebastian Pölsterl, Nassir Navab, Christian Wachinger

A disadvantage of FL is the dependence on a central server, which requires all clients to agree on one trusted central body, and whose failure would disrupt the training process of all clients.

Brain Segmentation Federated Learning

Perceptual Embedding Consistency for Seamless Reconstruction of Tilewise Style Transfer

no code implementations3 Jun 2019 Amal Lahiani, Nassir Navab, Shadi Albarqouni, Eldad Klaiman

Recent work has shown Generative Adversarial Networks(GANs) can be used to create realistic images of virtually stained slide images in digital pathology with clinically validated interpretability.

Style Transfer

Reflective-AR Display: An Interaction Methodology for Virtual-Real Alignment in Medical Robotics

no code implementations23 Jul 2019 Javad Fotouhi, Tianyu Song, Arian Mehrfard, Giacomo Taylor, Qiaochu Wang, Fengfang Xian, Alejandro Martin-Gomez, Bernhard Fuerst, Mehran Armand, Mathias Unberath, Nassir Navab

To overcome this challenge, we introduce a novel registration concept for intuitive alignment of AR content to its physical counterpart by providing a multi-view AR experience via reflective-AR displays that simultaneously show the augmentations from multiple viewpoints.

Few-Shot Meta-Denoising

no code implementations31 Jul 2019 Leslie Casas, Attila Klimmek, Gustavo Carneiro, Nassir Navab, Vasileios Belagiannis

A solution to mitigate the small training set issue is to pre-train a denoising model with small training sets containing pairs of clean and synthesized noisy signals, produced from empirical noise priors, and fine-tune on the available small training set.

Denoising Few-Shot Learning +1

Object-Driven Multi-Layer Scene Decomposition From a Single Image

no code implementations ICCV 2019 Helisa Dhamo, Nassir Navab, Federico Tombari

Our approach aims at building up a Layered Depth Image (LDI) from a single RGB input, which is an efficient representation that arranges the scene in layers, including originally occluded regions.

Hallucination

ForkNet: Multi-branch Volumetric Semantic Completion from a Single Depth Image

no code implementations ICCV 2019 Yida Wang, David Joseph Tan, Nassir Navab, Federico Tombari

We propose a novel model for 3D semantic completion from a single depth image, based on a single encoder and three separate generators used to reconstruct different geometric and semantic representations of the original and completed scene, all sharing the same latent space.

Ranked #7 on 3D Semantic Scene Completion on NYUv2 (using extra training data)

3D Semantic Scene Completion Attribute

Learn to Segment Organs with a Few Bounding Boxes

no code implementations17 Sep 2019 Abhijeet Parida, Arianne Tran, Nassir Navab, Shadi Albarqouni

Semantic segmentation is an import task in the medical field to identify the exact extent and orientation of significant structures like organs and pathology.

Segmentation Semantic Segmentation

Learn to Estimate Labels Uncertainty for Quality Assurance

no code implementations17 Sep 2019 Agnieszka Tomczack, Nassir Navab, Shadi Albarqouni

Deep Learning sets the state-of-the-art in many challenging tasks showing outstanding performance in a broad range of applications.

Bayesian Inference

Learning to Avoid Poor Images: Towards Task-aware C-arm Cone-beam CT Trajectories

no code implementations19 Sep 2019 Jan-Nico Zaech, Cong Gao, Bastian Bier, Russell Taylor, Andreas Maier, Nassir Navab, Mathias Unberath

Metal artifacts in computed tomography (CT) arise from a mismatch between physics of image formation and idealized assumptions during tomographic reconstruction.

Computed Tomography (CT)

CAI4CAI: The Rise of Contextual Artificial Intelligence in Computer Assisted Interventions

no code implementations20 Oct 2019 Tom Vercauteren, Mathias Unberath, Nicolas Padoy, Nassir Navab

Data-driven computational approaches have evolved to enable extraction of information from medical images with a reliability, accuracy and speed which is already transforming their interpretation and exploitation in clinical practice.

Decision Making

Radar Emitter Classification with Attribute-specific Recurrent Neural Networks

no code implementations18 Nov 2019 Paolo Notaro, Magdalini Paschali, Carsten Hopke, David Wittmann, Nassir Navab

Radar pulse streams exhibit increasingly complex temporal patterns and can no longer rely on a purely value-based analysis of the pulse attributes for the purpose of emitter classification.

Attribute Classification +1

Signal Clustering with Class-independent Segmentation

no code implementations18 Nov 2019 Stefano Gasperini, Magdalini Paschali, Carsten Hopke, David Wittmann, Nassir Navab

Radar signals have been dramatically increasing in complexity, limiting the source separation ability of traditional approaches.

Clustering Image Segmentation +2

Improving Feature Attribution through Input-specific Network Pruning

no code implementations25 Nov 2019 Ashkan Khakzar, Soroosh Baselizadeh, Saurabh Khanduja, Christian Rupprecht, Seong Tae Kim, Nassir Navab

Attributing the output of a neural network to the contribution of given input elements is a way of shedding light on the black-box nature of neural networks.

Network Pruning

A Comparative Analysis of Virtual Reality Head-Mounted Display Systems

no code implementations5 Dec 2019 Arian Mehrfard, Javad Fotouhi, Giacomo Taylor, Tess Forster, Nassir Navab, Bernhard Fuerst

With recent advances of Virtual Reality (VR) technology, the deployment of such will dramatically increase in non-entertainment environments, such as professional education and training, manufacturing, service, or low frequency/high risk scenarios.

Understanding the effects of artifacts on automated polyp detection and incorporating that knowledge via learning without forgetting

1 code implementation7 Feb 2020 Maxime Kayser, Roger D. Soberanis-Mukul, Anna-Maria Zvereva, Peter Klare, Nassir Navab, Shadi Albarqouni

We then investigated different strategies, such as a learning without forgetting framework, to leverage artifact knowledge to improve automated polyp detection.

Object Localization

Spatiotemporal-Aware Augmented Reality: Redefining HCI in Image-Guided Therapy

no code implementations4 Mar 2020 Javad Fotouhi, Arian Mehrfard, Tianyu Song, Alex Johnson, Greg Osgood, Mathias Unberath, Mehran Armand, Nassir Navab

Suboptimal interaction with patient data and challenges in mastering 3D anatomy based on ill-posed 2D interventional images are essential concerns in image-guided therapies.

Anatomy Management

From Perspective X-ray Imaging to Parallax-Robust Orthographic Stitching

no code implementations5 Mar 2020 Javad Fotouhi, Xingtong Liu, Mehran Armand, Nassir Navab, Mathias Unberath

Stitching images acquired under perspective projective geometry is a relevant topic in computer vision with multiple applications ranging from smartphone panoramas to the construction of digital maps.

Anatomy Image Stitching

On the Effectiveness of Virtual Reality-based Training for Robotic Setup

no code implementations3 Mar 2020 Arian Mehrfard, Javad Fotouhi, Tess Forster, Giacomo Taylor, Danyal Fer, Deborah Nagle, Nassir Navab, Bernhard Fuerst

We trained 30 participants on how to set up a robotic arm in an environment mimicking clinical setup.

Robotics

Latent-Graph Learning for Disease Prediction

no code implementations27 Mar 2020 Luca Cosmo, Anees Kazi, Seyed-Ahmad Ahmadi, Nassir Navab, Michael Bronstein

Recently, Graph Convolutional Networks (GCNs) have proven to be a powerful machine learning tool for Computer-Aided Diagnosis (CADx) and disease prediction.

Disease Prediction General Classification +1

Confident Coreset for Active Learning in Medical Image Analysis

no code implementations5 Apr 2020 Seong Tae Kim, Farrukh Mushtaq, Nassir Navab

Active learning is one of the solutions to this problem where an active learner is designed to indicate which samples need to be annotated to effectively train a target model.

Active Learning

Learning 3D Semantic Scene Graphs from 3D Indoor Reconstructions

no code implementations CVPR 2020 Johanna Wald, Helisa Dhamo, Nassir Navab, Federico Tombari

In our work we focus on scene graphs, a data structure that organizes the entities of a scene in a graph, where objects are nodes and their relationships modeled as edges.

3d scene graph generation 3D Semantic Segmentation +2

Colonoscope tracking method based on shape estimation network

no code implementations20 Apr 2020 Masahiro Oda, Holger R. Roth, Takayuki Kitasaka, Kazuhiro Furukawa, Ryoji Miyahara, Yoshiki Hirooka, Nassir Navab, Kensaku MORI

We utilize the shape estimation network (SEN), which estimates deformed colon shape during colonoscope insertions.

Position

Explicit Domain Adaptation with Loosely Coupled Samples

no code implementations24 Apr 2020 Oliver Scheel, Loren Schwarz, Nassir Navab, Federico Tombari

In this work we propose a transfer learning framework, core of which is learning an explicit mapping between domains.

Autonomous Driving Domain Adaptation +4

Colon Shape Estimation Method for Colonoscope Tracking using Recurrent Neural Networks

no code implementations20 Apr 2020 Masahiro Oda, Holger R. Roth, Takayuki Kitasaka, Kazuhiro Furukawa, Ryoji Miyahara, Yoshiki Hirooka, Hidemi Goto, Nassir Navab, Kensaku MORI

We propose a colon deformation estimation method using RNN and obtain the colonoscope shape from electromagnetic sensors during its insertion into the colon.

Decision Support for Intoxication Prediction Using Graph Convolutional Networks

no code implementations2 May 2020 Hendrik Burwinkel, Matthias Keicher, David Bani-Harouni, Tobias Zellner, Florian Eyer, Nassir Navab, Seyed-Ahmad Ahmadi

Due to the time-sensitive nature of these cases, doctors are required to propose a correct diagnosis and intervention within a minimal time frame.

Efficient Ensemble Model Generation for Uncertainty Estimation with Bayesian Approximation in Segmentation

no code implementations21 May 2020 Hong Joo Lee, Seong Tae Kim, Hakmin Lee, Nassir Navab, Yong Man Ro

Experimental results show that the proposed method could provide useful uncertainty information by Bayesian approximation with the efficient ensemble model generation and improve the predictive performance.

Segmentation

Augment Yourself: Mixed Reality Self-Augmentation Using Optical See-through Head-mounted Displays and Physical Mirrors

no code implementations6 Jul 2020 Mathias Unberath, Kevin Yu, Roghayeh Barmaki, Alex Johnson, Nassir Navab

Consequently, most MR applications that are centered around the user, such as virtual dressing rooms or learning of body movements, cannot be realized with HMDs.

Anatomy Mixed Reality

Towards Unsupervised Learning for Instrument Segmentation in Robotic Surgery with Cycle-Consistent Adversarial Networks

no code implementations9 Jul 2020 Daniil Pakhomov, Wei Shen, Nassir Navab

Surgical tool segmentation in endoscopic images is an important problem: it is a crucial step towards full instrument pose estimation and it is used for integration of pre- and intra-operative images into the endoscopic view.

Image Segmentation Image-to-Image Translation +3

Searching for Efficient Architecture for Instrument Segmentation in Robotic Surgery

no code implementations8 Jul 2020 Daniil Pakhomov, Nassir Navab

To account for reduced accuracy of the discovered light-weight deep residual network and avoid adding any additional computational burden, we perform a differentiable search over dilation rates for residual units of our network.

Pose Estimation Segmentation

DynaMiTe: A Dynamic Local Motion Model with Temporal Constraints for Robust Real-Time Feature Matching

no code implementations31 Jul 2020 Patrick Ruhkamp, Ruiqi Gong, Nassir Navab, Benjamin Busam

Feature based visual odometry and SLAM methods require accurate and fast correspondence matching between consecutive image frames for precise camera pose estimation in real-time.

Descriptive Pose Estimation +1

Continual Class Incremental Learning for CT Thoracic Segmentation

no code implementations12 Aug 2020 Abdelrahman Elskhawy, Aneta Lisowska, Matthias Keicher, Josep Henry, Paul Thomson, Nassir Navab

In this work, we evaluate FT and LwF for class incremental learning in multi-organ segmentation using the publicly available AAPM dataset.

Class Incremental Learning Incremental Learning +2

A Learning-based Method for Online Adjustment of C-arm Cone-Beam CT Source Trajectories for Artifact Avoidance

no code implementations14 Aug 2020 Mareike Thies, Jan-Nico Zäch, Cong Gao, Russell Taylor, Nassir Navab, Andreas Maier, Mathias Unberath

We propose to adjust the C-arm CBCT source trajectory during the scan to optimize reconstruction quality with respect to a certain task, i. e. verification of screw placement.

Anatomy Tomographic Reconstructions

Inverse Distance Aggregation for Federated Learning with Non-IID Data

no code implementations17 Aug 2020 Yousef Yeganeh, Azade Farshad, Nassir Navab, Shadi Albarqouni

Federated learning (FL) has been a promising approach in the field of medical imaging in recent years.

Federated Learning

Polyp-artifact relationship analysis using graph inductive learned representations

no code implementations15 Sep 2020 Roger D. Soberanis-Mukul, Shadi Albarqouni, Nassir Navab

In inference, we use this classifier to analyze a second graph, generated from artifact and polyp predictions given by region proposal networks.

Graph Representation Learning Object Localization +1

Multiple human pose estimation with temporally consistent 3d pictorial structures

no code implementations6 Sep 2014 Vasileios Belagiannis, Xinchao Wang, Bernt Schiele, Pascal Fua, Slobodan Ilic, Nassir Navab

To address these challenges, we propose a temporally consistent 3D Pictorial Structures model (3DPS) for multiple human pose estimation from multiple camera views.

3D Multi-Person Pose Estimation 3D Pose Estimation

I Like to Move It: 6D Pose Estimation as an Action Decision Process

no code implementations26 Sep 2020 Benjamin Busam, Hyun Jun Jung, Nassir Navab

We change this paradigm and reformulate the problem as an action decision process where an initial pose is updated in incremental discrete steps that sequentially move a virtual 3D rendering towards the correct solution.

6D Pose Estimation Object +3

Panoster: End-to-end Panoptic Segmentation of LiDAR Point Clouds

no code implementations28 Oct 2020 Stefano Gasperini, Mohammad-Ali Nikouei Mahani, Alvaro Marcos-Ramiro, Nassir Navab, Federico Tombari

Panoptic segmentation has recently unified semantic and instance segmentation, previously addressed separately, thus taking a step further towards creating more comprehensive and efficient perception systems.

Clustering Instance Segmentation +2

Self-Supervised Out-of-Distribution Detection in Brain CT Scans

no code implementations10 Nov 2020 Abinav Ravi Venkatakrishnan, Seong Tae Kim, Rami Eisawy, Franz Pfister, Nassir Navab

To address these issues, recently, unsupervised deep anomaly detection methods that train the model on large-sized normal scans and detect abnormal scans by calculating reconstruction error have been reported.

Anomaly Detection Out-of-Distribution Detection +1

Rethinking Positive Aggregation and Propagation of Gradients in Gradient-based Saliency Methods

no code implementations1 Dec 2020 Ashkan Khakzar, Soroosh Baselizadeh, Nassir Navab

In this work, we empirically show that two approaches for handling the gradient information, namely positive aggregation, and positive propagation, break these methods.

OperA: Attention-Regularized Transformers for Surgical Phase Recognition

no code implementations5 Mar 2021 Tobias Czempiel, Magdalini Paschali, Daniel Ostler, Seong Tae Kim, Benjamin Busam, Nassir Navab

In this paper we introduce OperA, a transformer-based model that accurately predicts surgical phases from long video sequences.

Surgical phase recognition

GLOWin: A Flow-based Invertible Generative Framework for Learning Disentangled Feature Representations in Medical Images

no code implementations19 Mar 2021 Aadhithya Sankar, Matthias Keicher, Rami Eisawy, Abhijeet Parida, Franz Pfister, Seong Tae Kim, Nassir Navab

Disentangled representations can be useful in many downstream tasks, help to make deep learning models more interpretable, and allow for control over features of synthetically generated images that can be useful in training other models that require a large number of labelled or unlabelled data.

Disentanglement

IA-GCN: Interpretable Attention based Graph Convolutional Network for Disease prediction

no code implementations29 Mar 2021 Anees Kazi, Soroush Farghadani, Nassir Navab

The main novelty lies in the interpretable attention module (IAM), which directly operates on multi-modal features.

Decision Making Disease Prediction +3

Deep Direct Volume Rendering: Learning Visual Feature Mappings From Exemplary Images

no code implementations9 Jun 2021 Jakob Weiss, Nassir Navab

In this work, we introduce Deep Direct Volume Rendering (DeepDVR), a generalization of DVR that allows for the integration of deep neural networks into the DVR algorithm.

Colorization Inverse Rendering +1

Multimodal Semantic Scene Graphs for Holistic Modeling of Surgical Procedures

no code implementations9 Jun 2021 Ege Özsoy, Evin Pınar Örnek, Ulrich Eck, Federico Tombari, Nassir Navab

We then use MSSG to introduce a dynamically generated graphical user interface tool for surgical procedure analysis which could be used for many applications including process optimization, OR design and automatic report generation.

U-GAT: Multimodal Graph Attention Network for COVID-19 Outcome Prediction

no code implementations29 Jul 2021 Matthias Keicher, Hendrik Burwinkel, David Bani-Harouni, Magdalini Paschali, Tobias Czempiel, Egon Burian, Marcus R. Makowski, Rickmer Braren, Nassir Navab, Thomas Wendler

Specifically, we introduce a multimodal similarity metric to build a population graph for clustering patients and an image-based end-to-end Graph Attention Network to process this graph and predict the COVID-19 patient outcomes: admission to ICU, need for ventilation and mortality.

Clustering Decision Making +1

R4Dyn: Exploring Radar for Self-Supervised Monocular Depth Estimation of Dynamic Scenes

no code implementations10 Aug 2021 Stefano Gasperini, Patrick Koch, Vinzenz Dallabetta, Nassir Navab, Benjamin Busam, Federico Tombari

While self-supervised monocular depth estimation in driving scenarios has achieved comparable performance to supervised approaches, violations of the static world assumption can still lead to erroneous depth predictions of traffic participants, posing a potential safety issue.

Autonomous Vehicles Monocular Depth Estimation

Unconditional Scene Graph Generation

no code implementations ICCV 2021 Sarthak Garg, Helisa Dhamo, Azade Farshad, Sabrina Musatian, Nassir Navab, Federico Tombari

Scene graphs, composed of nodes as objects and directed-edges as relationships among objects, offer an alternative representation of a scene that is more semantically grounded than images.

Anomaly Detection Graph Generation +3

Tracked 3D Ultrasound and Deep Neural Network-based Thyroid Segmentation reduce Interobserver Variability in Thyroid Volumetry

no code implementations10 Aug 2021 Markus Krönke, Christine Eilers, Desislava Dimova, Melanie Köhler, Gabriel Buschner, Lilit Mirzojan, Lemonia Konstantinidou, Marcus R. Makowski, James Nagarajah, Nassir Navab, Wolfgang Weber, Thomas Wendler

Conclusion: Tracked 3D ultrasound combined with a CNN segmentation significantly reduces interobserver variability in thyroid volumetry and increases the accuracy of the measurements with shorter acquisition times.

MetaMedSeg: Volumetric Meta-learning for Few-Shot Organ Segmentation

no code implementations18 Sep 2021 Anastasia Makarevich, Azade Farshad, Vasileios Belagiannis, Nassir Navab

In this work, we present MetaMedSeg, a gradient-based meta-learning algorithm that redefines the meta-learning task for the volumetric medical data with the goal to capture the variety between the slices.

Image Segmentation Medical Image Segmentation +3

Adversarial Domain Feature Adaptation for Bronchoscopic Depth Estimation

no code implementations24 Sep 2021 Mert Asim Karaoglu, Nikolas Brasch, Marijn Stollenga, Wolfgang Wein, Nassir Navab, Federico Tombari, Alexander Ladikos

The results of our experiments show that the proposed method improves the network's performance on real images by a considerable margin and can be employed in 3D reconstruction pipelines.

3D Reconstruction Depth Estimation

Semantic Image Alignment for Vehicle Localization

no code implementations8 Oct 2021 Markus Herb, Matthias Lemberger, Marcel M. Schmitt, Alexander Kurz, Tobias Weiherer, Nassir Navab, Federico Tombari

Accurate and reliable localization is a fundamental requirement for autonomous vehicles to use map information in higher-level tasks such as navigation or planning.

Autonomous Vehicles Semantic Segmentation +1

Wild ToFu: Improving Range and Quality of Indirect Time-of-Flight Depth with RGB Fusion in Challenging Environments

no code implementations7 Dec 2021 HyunJun Jung, Nikolas Brasch, Ales Leonardis, Nassir Navab, Benjamin Busam

Indirect Time-of-Flight (I-ToF) imaging is a widespread way of depth estimation for mobile devices due to its small size and affordable price.

Depth Estimation Depth Prediction

Transformers in Action: Weakly Supervised Action Segmentation

no code implementations14 Jan 2022 John Ridley, Huseyin Coskun, David Joseph Tan, Nassir Navab, Federico Tombari

The video action segmentation task is regularly explored under weaker forms of supervision, such as transcript supervision, where a list of actions is easier to obtain than dense frame-wise labels.

Action Segmentation

From 2D to 3D: Re-thinking Benchmarking of Monocular Depth Prediction

no code implementations15 Mar 2022 Evin Pınar Örnek, Shristi Mudgal, Johanna Wald, Yida Wang, Nassir Navab, Federico Tombari

There have been numerous recently proposed methods for monocular depth prediction (MDP) coupled with the equally rapid evolution of benchmarking tools.

Benchmarking Depth Estimation +1

Know your sensORs -- A Modality Study For Surgical Action Classification

no code implementations16 Mar 2022 Lennart Bastian, Tobias Czempiel, Christian Heiliger, Konrad Karcz, Ulrich Eck, Benjamin Busam, Nassir Navab

Existing datasets from OR room cameras are thus far limited in size or modalities acquired, leaving it unclear which sensor modalities are best suited for tasks such as recognizing surgical action from videos.

Action Classification Action Recognition +1

Surgical Workflow Recognition: from Analysis of Challenges to Architectural Study

no code implementations17 Mar 2022 Tobias Czempiel, Aidean Sharghi, Magdalini Paschali, Nassir Navab, Omid Mohareri

Algorithmic surgical workflow recognition is an ongoing research field and can be divided into laparoscopic (Internal) and operating room (External) analysis.

Conditional Generative Data Augmentation for Clinical Audio Datasets

no code implementations22 Mar 2022 Matthias Seibold, Armando Hoch, Mazda Farshad, Nassir Navab, Philipp Fürnstahl

In this work, we propose a novel data augmentation method for clinical audio datasets based on a conditional Wasserstein Generative Adversarial Network with Gradient Penalty (cWGAN-GP), operating on log-mel spectrograms.

Data Augmentation Generative Adversarial Network

FlexR: Few-shot Classification with Language Embeddings for Structured Reporting of Chest X-rays

no code implementations29 Mar 2022 Matthias Keicher, Kamilia Zaripova, Tobias Czempiel, Kristina Mach, Ashkan Khakzar, Nassir Navab

The automation of chest X-ray reporting has garnered significant interest due to the time-consuming nature of the task.

Graph-in-Graph (GiG): Learning interpretable latent graphs in non-Euclidean domain for biological and healthcare applications

no code implementations1 Apr 2022 Kamilia Mullakaeva, Luca Cosmo, Anees Kazi, Seyed-Ahmad Ahmadi, Nassir Navab, Michael M. Bronstein

In this work, we propose Graph-in-Graph (GiG), a neural network architecture for protein classification and brain imaging applications that exploits the graph representation of the input data samples and their latent relation.

Property Prediction

Analyzing the Effects of Handling Data Imbalance on Learned Features from Medical Images by Looking Into the Models

no code implementations4 Apr 2022 Ashkan Khakzar, Yawei Li, Yang Zhang, Mirac Sanisoglu, Seong Tae Kim, Mina Rezaei, Bernd Bischl, Nassir Navab

One challenging property lurking in medical datasets is the imbalanced data distribution, where the frequency of the samples between the different classes is not balanced.

Affective Medical Estimation and Decision Making via Visualized Learning and Deep Learning

1 code implementation9 May 2022 Mohammad Eslami, Solale Tabarestani, Ehsan Adeli, Glyn Elwyn, Tobias Elze, Mengyu Wang, Nazlee Zebardast, Nassir Navab, Malek Adjouadi

With the advent of sophisticated machine learning (ML) techniques and the promising results they yield, especially in medical applications, where they have been investigated for different tasks to enhance the decision-making process.

Decision Making Memorization +1

BFS-Net: Weakly Supervised Cell Instance Segmentation from Bright-Field Microscopy Z-Stacks

no code implementations9 Jun 2022 Shervin Dehghani, Benjamin Busam, Nassir Navab, Ali Nasseri

Despite its broad availability, volumetric information acquisition from Bright-Field Microscopy (BFM) is inherently difficult due to the projective nature of the acquisition process.

Instance Segmentation Semantic Segmentation

Virtual embeddings and self-consistency for self-supervised learning

no code implementations13 Jun 2022 Tariq Bdair, Hossam Abdelhamid, Nassir Navab, Shadi Albarqouni

We validate TriMix on eight benchmark datasets consisting of natural and medical images with an improvement of 2. 71% and 0. 41% better than the second-best models for both data types.

Data Augmentation Representation Learning +1

U-PET: MRI-based Dementia Detection with Joint Generation of Synthetic FDG-PET Images

no code implementations16 Jun 2022 Marcel Kollovieh, Matthias Keicher, Stephan Wunderlich, Hendrik Burwinkel, Thomas Wendler, Nassir Navab

To this end, we propose a multi-task method based on U-Net that takes T1-weighted MR images as an input to generate synthetic FDG-PET images and classifies the dementia progression of the patient into cognitive normal (CN), cognitive impairment (MCI), and AD.

DeStripe: A Self2Self Spatio-Spectral Graph Neural Network with Unfolded Hessian for Stripe Artifact Removal in Light-sheet Microscopy

no code implementations27 Jun 2022 Yu Liu, Kurt Weiss, Nassir Navab, Carsten Marr, Jan Huisken, Tingying Peng

Light-sheet fluorescence microscopy (LSFM) is a cutting-edge volumetric imaging technique that allows for three-dimensional imaging of mesoscopic samples with decoupled illumination and detection paths.

Denoising

Adaptive Personlization in Federated Learning for Highly Non-i.i.d. Data

no code implementations7 Jul 2022 Yousef Yeganeh, Azade Farshad, Johann Boschmann, Richard Gaus, Maximilian Frantzen, Nassir Navab

Although most medical centers conduct similar medical imaging tasks, their differences, such as specializations, number of patients, and devices, lead to distinctive data distributions.

Clustering Federated Learning +3

Shape-Aware Masking for Inpainting in Medical Imaging

no code implementations12 Jul 2022 Yousef Yeganeh, Azade Farshad, Nassir Navab

Inpainting has recently been proposed as a successful deep learning technique for unsupervised medical image model discovery.

Anatomy Image Reconstruction +1

Exploiting Diversity of Unlabeled Data for Label-Efficient Semi-Supervised Active Learning

no code implementations25 Jul 2022 Felix Buchert, Nassir Navab, Seong Tae Kim

By considering the consistency information with the diversity in the consistency-based embedding scheme, the proposed method could select more informative samples for labeling in the semi-supervised learning setting.

Active Learning Representation Learning

Spotlight on nerves: Portable multispectral optoacoustic imaging of peripheral nerve vascularization and morphology

no code implementations28 Jul 2022 Dominik Jüstel, Hedwig Irl, Florian Hinterwimmer, Christoph Dehner, Walter Simson, Nassir Navab, Gerhard Schneider, Vasilis Ntziachristos

Various morphological and functional parameters of peripheral nerves and their vascular supply are indicative of pathological changes due to injury or disease.

CloudAttention: Efficient Multi-Scale Attention Scheme For 3D Point Cloud Learning

no code implementations31 Jul 2022 Mahdi Saleh, Yige Wang, Nassir Navab, Benjamin Busam, Federico Tombari

The proposed hierarchical model achieves state-of-the-art shape classification in mean accuracy and yields results on par with the previous segmentation methods while requiring significantly fewer computations.

Scene Segmentation Segmentation

DA$^2$ Dataset: Toward Dexterity-Aware Dual-Arm Grasping

no code implementations31 Jul 2022 Guangyao Zhai, Yu Zheng, Ziwei Xu, Xin Kong, Yong liu, Benjamin Busam, Yi Ren, Nassir Navab, Zhengyou Zhang

In this paper, we introduce DA$^2$, the first large-scale dual-arm dexterity-aware dataset for the generation of optimal bimanual grasping pairs for arbitrary large objects.

Segmenting Known Objects and Unseen Unknowns without Prior Knowledge

no code implementations ICCV 2023 Stefano Gasperini, Alvaro Marcos-Ramiro, Michael Schmidt, Nassir Navab, Benjamin Busam, Federico Tombari

By doing so, for the first time in panoptic segmentation with unknown objects, our U3HS is trained without unknown categories, reducing assumptions and leaving the settings as unconstrained as in real-life scenarios.

Panoptic Segmentation Scene Understanding +1

What can we learn about a generated image corrupting its latent representation?

no code implementations12 Oct 2022 Agnieszka Tomczak, Aarushi Gupta, Slobodan Ilic, Nassir Navab, Shadi Albarqouni

The purpose of this work is to investigate the hypothesis that we can predict image quality based on its latent representation in the GANs bottleneck.

Image-to-Image Translation Liver Segmentation

Improved Techniques for the Conditional Generative Augmentation of Clinical Audio Data

no code implementations5 Nov 2022 Mane Margaryan, Matthias Seibold, Indu Joshi, Mazda Farshad, Philipp Fürnstahl, Nassir Navab

In contrast to previously proposed fully convolutional models, the proposed model implements residual Squeeze and Excitation modules in the generator architecture.

Data Augmentation

DisPositioNet: Disentangled Pose and Identity in Semantic Image Manipulation

no code implementations10 Nov 2022 Azade Farshad, Yousef Yeganeh, Helisa Dhamo, Federico Tombari, Nassir Navab

Graph representation of objects and their relations in a scene, known as a scene graph, provides a precise and discernible interface to manipulate a scene by modifying the nodes or the edges in the graph.

Disentanglement Image Manipulation

TexPose: Neural Texture Learning for Self-Supervised 6D Object Pose Estimation

no code implementations CVPR 2023 Hanzhi Chen, Fabian Manhardt, Nassir Navab, Benjamin Busam

In this paper, we introduce neural texture learning for 6D object pose estimation from synthetic data and a few unlabelled real images.

6D Pose Estimation using RGB

Lidar Upsampling with Sliced Wasserstein Distance

no code implementations31 Jan 2023 Artem Savkin, Yida Wang, Sebastian Wirkert, Nassir Navab, Federico Tombar

This in turn enables our method to employ a one-stage upsampling paradigm without the need for coarse and fine reconstruction.

Autonomous Driving Domain Adaptation +1

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